Gene detail

Detailed information of g1515.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAG2188802.1, unnamed protein product [Mytilus edulis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5XTK9	Bifunctional polymyxin resistance protein ArnA OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=arnA PE=3 SV=1
A6TF98	Bifunctional polymyxin resistance protein ArnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) OX=272620 GN=arnA PE=3 SV=1
Q1C742	Bifunctional polymyxin resistance protein ArnA OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=arnA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000017 (this species only)
Orthogroup (gene family)	OG0001086 (this species only)
Orthogroup (gene family)	OG0001720 (this species only)
Orthogroup (gene family)	OG0003385 (this species only)
Orthogroup (gene family)	OG0003566 (this species only)
Orthogroup (gene family)	OG0005723 (this species only)
Orthogroup (gene family)	OG0006344 (this species only)
Orthogroup (gene family)	OG0008741 (this species only)
Orthogroup (gene family)	OG0009564 (this species only)
Orthogroup (gene family)	OG0021374 (this species only)
Orthogroup (gene family)	OG0022259 (this species only)
Orthogroup (gene family)	OG0172009 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF02494 all species →	HYR	HYR domain	Domain	Interproscan
PF01370 all species →	Epimerase	NAD dependent epimerase/dehydratase family	Family	Interproscan
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan
PF10171 all species →	Tim29	Translocase of the Inner Mitochondrial membrane 29	Family	Interproscan
PF12923 all species →	RRP7	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR006585 all species →	Domain	Fucolectin tachylectin-4 pentraxin-1	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR052071 all species →	Family	Signal peptide, CUB and EGF-like domain-containing protein	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR039031 all species →	Family	Mucolipin	Interproscan
IPR001509 all species →	Domain	NAD-dependent epimerase/dehydratase	Interproscan
IPR050177 all species →	Family	Bifunctional lipid A modification and metabolic enzymes	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR038902 all species →	Family	Integrator complex subunit 1	Interproscan
IPR050281 all species →	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR002937 all species →	Domain	Amine oxidase	Interproscan
IPR019322 all species →	Family	Mitochondrial import inner membrane translocase subunit Tim29	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR040446 all species →	Family	Ribosomal RNA-processing protein 7	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034890 all species →	Domain	Rrp7A, RNA recognition motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR024326 all species →	Domain	Ribosomal RNA-processing protein 7, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR31511 all species →	PROTEIN CBG23764	Interproscan
PTHR24046 all species →	SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING	Interproscan
PTHR12127 all species →	MUCOLIPIN	Interproscan
PTHR43245 all species →	BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA	Interproscan
PTHR21224 all species →	UNCHARACTERIZED	Interproscan
PTHR10742 all species →	FLAVIN MONOAMINE OXIDASE	Interproscan
PTHR21435 all species →	UNCHARACTERIZED	Interproscan
PTHR33244 all species →	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR13191 all species →	RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072345 all species →	Molecular Function	NAADP-sensitive calcium-release channel activity	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034474 all species →	Biological Process	U2 snRNA 3'-end processing	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0046592 all species →	Molecular Function	polyamine oxidase activity	Interproscan
GO:0042721 all species →	Cellular Component	TIM22 mitochondrial import inner membrane insertion complex	Interproscan
GO:0045039 all species →	Biological Process	protein insertion into mitochondrial inner membrane	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0032545 all species →	Cellular Component	CURI complex	Interproscan
GO:0034456 all species →	Cellular Component	UTP-C complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14545	RRP7; ribosomal RNA-processing protein 7	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.