Gene detail

Detailed information of g1516.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_052690758.1, uncharacterized protein LOC128168645 [Crassostrea angulata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
B5EZH8	Bifunctional polymyxin resistance protein ArnA OS=Salmonella agona (strain SL483) OX=454166 GN=arnA PE=3 SV=1
B5R272	Bifunctional polymyxin resistance protein ArnA OS=Salmonella enteritidis PT4 (strain P125109) OX=550537 GN=arnA PE=3 SV=1
B5RCC4	Bifunctional polymyxin resistance protein ArnA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=arnA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF00472	RF-1	RF-1 domain	Family	Interproscan
PF02911	Formyl_trans_C	Formyl transferase, C-terminal domain	Domain	Interproscan
PF00551	Formyl_trans_N	Formyl transferase	Domain	Interproscan
PF13349	DUF4097	Putative adhesin	Repeat	Interproscan
PF18750	SNAD4	Secreted Novel AID/APOBEC-like Deaminase 4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR052104	Family	Mitochondrial Release Factor mL62	Interproscan
IPR000352	Domain	Peptide chain release factor class I	Interproscan
IPR011034	Homologous_superfamily	Formyl transferase-like, C-terminal domain superfamily	Interproscan
IPR005793	Domain	Formyl transferase, C-terminal	Interproscan
IPR036477	Homologous_superfamily	Formyl transferase, N-terminal domain superfamily	Interproscan
IPR002376	Domain	Formyl transferase, N-terminal	Interproscan
IPR016192	Binding_site	APOBEC/CMP deaminase, zinc-binding	Interproscan
IPR025164	Domain	Toastrack DUF4097	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46601	ULP_PROTEASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR22955	RETROTRANSPOSON	Interproscan
PTHR11075	PEPTIDE CHAIN RELEASE FACTOR	Interproscan
PTHR11138	METHIONYL-TRNA FORMYLTRANSFERASE	Interproscan
PTHR34094	-	Interproscan
PTHR31511	PROTEIN CBG23764	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004045	Molecular Function	aminoacyl-tRNA hydrolase activity	Interproscan
GO:0005762	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0016150	Molecular Function	translation release factor activity, codon nonspecific	Interproscan
GO:0070126	Biological Process	mitochondrial translational termination	Interproscan
GO:0003747	Molecular Function	translation release factor activity	Interproscan
GO:0006415	Biological Process	translational termination	Interproscan
GO:0004479	Molecular Function	methionyl-tRNA formyltransferase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0071951	Biological Process	conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01611	speD, AMD1; S-adenosylmethionine decarboxylase	EC:4.1.1.50	Aminoacyl-tRNA biosynthesis	ko00970	deepkoala
			Translation factors	ko03012	deepkoala
			Arginine and proline metabolism	ko00330	deepkoala