Gene detail

Detailed information of g152.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047134602.1, ras-like protein 1 isoform X3 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08AT1	Ras-like protein family member 12 OS=Mus musculus OX=10090 GN=Rasl12 PE=2 SV=1
Q08E00	Ras-like protein family member 12 OS=Bos taurus OX=9913 GN=RASL12 PE=2 SV=1
Q9NYN1	Ras-like protein family member 12 OS=Homo sapiens OX=9606 GN=RASL12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000092 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000382 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001048 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001870 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002123 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002455 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003407 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003533 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006359 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006690 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007988 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008813 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008936 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009892 (this species only) · gene tree & orthology
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF12309 all species →	KBP_C	KIF-1 binding protein C terminal	Family	Interproscan
PF01380 all species →	SIS	SIS domain	Domain	Interproscan
PF00491 all species →	Arginase	Arginase family	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07693 all species →	KAP_NTPase	KAP family P-loop domain	Domain	Interproscan
PF00704 all species →	Glyco_hydro_18	Glycosyl hydrolases family 18	Domain	Interproscan
PF13902 all species →	R3H-assoc	R3H-associated N-terminal domain	Domain	Interproscan
PF13517 all species →	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR051065 all species →	Family	Ras-related small GTPase	Interproscan
IPR022083 all species →	Family	KIF-1 binding protein	Interproscan
IPR001347 all species →	Domain	SIS domain	Interproscan
IPR046348 all species →	Homologous_superfamily	SIS domain superfamily	Interproscan
IPR006035 all species →	Family	Ureohydrolase	Interproscan
IPR023696 all species →	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR052771 all species →	Family	Neurotrophin-activated signaling adaptor	Interproscan
IPR011646 all species →	Domain	KAP family P-loop domain	Interproscan
IPR001223 all species →	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR050542 all species →	Family	Glycosyl Hydrolase 18 Family Chitinases	Interproscan
IPR039629 all species →	Family	R3H domain-containing protein 4	Interproscan
IPR025952 all species →	Domain	R3H-associated N-terminal domain	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45704 all species →	RAS-LIKE FAMILY MEMBER 11	Interproscan
PTHR46321 all species →	KIF1-BINDING PROTEIN	Interproscan
PTHR38418 all species →	SUGAR ISOMERASE, KPSF/GUTQ (AFU_ORTHOLOGUE AFUA_6G08860)	Interproscan
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR24116 all species →	KINASE D-INTERACTING SUBSTRATE OF 220 KDA	Interproscan
PTHR45708 all species →	ENDOCHITINASE	Interproscan
PTHR34239 all species →	APPLE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR32019 all species →	R3H DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0021952 all species →	Biological Process	central nervous system projection neuron axonogenesis	Interproscan
GO:1990535 all species →	Biological Process	neuron projection maintenance	Interproscan
GO:0097367 all species →	Molecular Function	carbohydrate derivative binding	Interproscan
GO:1901135 all species →	Biological Process	carbohydrate derivative metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0007508 all species →	Biological Process	larval heart development	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0061343 all species →	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019887 all species →	Molecular Function	protein kinase regulator activity	Interproscan
GO:0030165 all species →	Molecular Function	PDZ domain binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004568 all species →	Molecular Function	chitinase activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12460	KIDINS220, ARMS; ankyrin repeat-rich membrane spanning protein	-	Neurotrophin signaling pathway	ko04722	deepkoala
K23845	KIFBP; KIF-binding protein	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →