Gene detail

Detailed information of g15229.t1 in Acropora digitifera

Genomic Location: chr7Alt:9295869...9305370
NR annotation: XP_044168564.1, uncharacterized protein LOC122952814 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr7Alt.g15229.t1

AAGTAAAAATGTTGCATTGGTACAAAAAGCTTTTTGAACCTCACCCACTTGAACTCTTTACGTTCTTCTTAATCGGTGAAATCTCACACTGTTTGCTGCGTGTCTCCCACTACAGTTTCAAATTAATAATTTATTAATACAGAAAACGTTTAATTTTGCAGTCAATAACTATTCATTGCAGTTTCTTCTCGTTTCTCTGTTTAAAACATCGAACATGCGTCTTTACTTACTTCTGTTCTTCAGCACGGTTGTTTACGCACTTACTCGCATCCTTGAACCAGAGTTTGAAGGCGTTAATTTCGCTGCAGCTTTGTTTGGAAAAAGGCTCGATATGGTCTTTCAAGAAACAACGGTGGATTCTGAAACCTCTTGCCAGATTCAGTGCCTCAAAAACAGCCGTTGTTTGTCGTACAATCTTGGCACCACAAACGGAAAGGACAAGTTTACTTGCCAATTGTGCGACTCTGATCGATTTACAAGTCATGAAAACCTTACAGAAGAAAAGAAATGGCACTACAGAGGAATGGAGAGTAGCTGTAAATCGAACAACTTTCTCTGTGGCAAAAAGGGAATCTGCATCCCTGACTATCACGGGCAAAGCTTGAAATGCAAATGCAGCCTCGGCTACACAGGAACCCCATGCGAACCTAAAAGCTGCTTTCAAGTTCTTCAAAGTGGAAATAATTCCACTGGTGTGTACCGCATCAATCCCGATGGAAATAAGCCAATCACAGTCAGCTGTGACATGACCACTGATGGCGGTGGTTGGACCGTTTTTCAGCGACGTGTGGATGGCTCAATAAATTTCTATCGTGGATGGACGGACTACAAGTTTGGCTTTGGGAATCTAAATGGTGAATTTTGGCTTGGAAATGACAACCTACATCGCATTGCAACCGCTGGTAACATGACGCTGAGAGTTGACCTGGAAGATTTTGATGGAAAAGTCGTCTTTGCTGAATATTCCATTTTTAAGGTAGCTGATGGATCAGATAAATACCGGCTTCGGATTGGAGAATACAGTGGCACAGCGGGCGATTCATTGTCAGATCTGAGGGCTCCACATCAGCGAACCCGTGACGAAGAAGGATTTAAAAAGTTCTGCGAAACCCTCCAGGACTGTGTGCCCTCGAGTTCCTTCTTTCTTTTTCATGATCTTAAGTCAAAATGTGCAGATGCTAATGTGCAATCGACTTCAACCGTAGATGAGGGTGTGGAGGATCAAGTGAGCACAGCCTTCACTGACAATTATGACATTGCTACCAATCGTTTCAAAGCTATTGTGGACGAGCATATTTCAAACATGACAATAACCGATGAGGAGATTCGTGAAACTGAACGTCTAACGAGGGGGCAAAACAAAAACCAGCTGTGGTTTGAGAAACGAAGATCTTTACTGACAGCTTCAAATTTTGGCAAAGCAGCTAAAACTAAAGTGGAGCCATCGAAGAAACTTAAAGCAATGCTGTATGCTAATTTTACGACGGAGGCTGTTCAGTATGGCATTGAAAGCGAGGAAAAAGCTGTGGCCATTTACATCAAAGATATGTCAGAAAAGGGGATCACTGTCAAGGTGGACGAGGTGGGACTTTTACAGTCCAAAGAAAAACCCTTTTTAGCAGCTAGTCTGGATCGAATCATAACAAACGTGGTCACAAACGAAAAGTGGGGAATGGAGATAAAATCACCTCTGAGCAAAGCAGGCATGACAGTTGATGATGCCTGCAAAAGTAAAAACTTTTGTCTAGAAAAACTCAATGATGGAACAATTAGACTGAAAAGAAATCATGACTATTACATTCAAGTGCAAGGTCAACTCTATTCAGCTTCTAACTTAGCCCTTAAAGGTATTGCTTTTATTCTGTATTTTGGAGAAGGAATGCCTCTGTTCAAAGAAAACATTTCCTTTGACAGCAGTCGGTGGAGAGAAGAACTTCTCCCCAGACTTGAGTACTTTTTTAAAAGGGCCCTTTTCCCTGAGATTCTTACGAAGAGGGTTGAGAGAGGAAAGTTGTTGTATCTCCATGGTGGCTGGATACCCTATGGGCAATACTCCTGTGCAGTTAGTGGACTGAAGTTAAGATTTAATAGAGCCCAGTGACATGTGACATTGTACTTTGTATTGAATTCCAAAGGCTCTCAGACAACCTCTAGGCTGTGTTTTTATTCATTTTGAATGCTTGATTGATATCTACTATTCAACAAAGGAAATTTGCCATTAGGACTTCTACAGATCTACTATCATTGACCAAGGAAAATTTAGATTTTGGTCACCAGAGAGGGTACGAAAGAACCCAATAAATTCTAAATCTGGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O70165	Ficolin-1 OS=Mus musculus OX=10090 GN=Fcn1 PE=1 SV=1
P19477	Fibrinogen-like protein A OS=Apostichopus parvimensis OX=1902835 PE=2 SV=1
Q9WTS8	Ficolin-1 OS=Rattus norvegicus OX=10116 GN=Fcn1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF01771 all species →	Viral_alk_exo	Viral alkaline exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR034720 all species →	Family	Viral alkaline exonuclease	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g15229.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.