Gene detail

Detailed information of g1524.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAA57211.1, hox1 [Podocoryna carnea]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08821	Homeobox protein Hox-A1 (Fragment) OS=Xenopus laevis OX=8355 GN=hoxa1 PE=2 SV=1
P09022	Homeobox protein Hox-A1 OS=Mus musculus OX=10090 GN=Hoxa1 PE=1 SV=2
P49639	Homeobox protein Hox-A1 OS=Homo sapiens OX=9606 GN=HOXA1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000015 (this species only)
Orthogroup (gene family)	OG0000082 (this species only)
Orthogroup (gene family)	OG0000129 (this species only)
Orthogroup (gene family)	OG0000836 (this species only)
Orthogroup (gene family)	OG0001630 (this species only)
Orthogroup (gene family)	OG0001652 (this species only)
Orthogroup (gene family)	OG0004367 (this species only)
Orthogroup (gene family)	OG0005094 (this species only)
Orthogroup (gene family)	OG0006817 (this species only)
Orthogroup (gene family)	OG0007674 (this species only)
Orthogroup (gene family)	OG0011894 (this species only)
Orthogroup (gene family)	OG0029699 (this species only)
Orthogroup (gene family)	OG0048267 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02245 all species →	Pur_DNA_glyco	Methylpurine-DNA glycosylase (MPG)	Domain	Interproscan
PF02460 all species →	Patched	Patched family	Family	Interproscan
PF02214 all species →	BTB_2	BTB/POZ domain	Domain	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF00689 all species →	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan
PF00079 all species →	Serpin	Serpin (serine protease inhibitor)	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR003180 all species →	Family	Methylpurine-DNA glycosylase	Interproscan
IPR011034 all species →	Homologous_superfamily	Formyl transferase-like, C-terminal domain superfamily	Interproscan
IPR036995 all species →	Homologous_superfamily	Methylpurine-DNA glycosylase superfamily	Interproscan
IPR044288 all species →	Family	E3 ubiquitin-protein ligase ZNF598/Hel2	Interproscan
IPR033370 all species →	Family	Conserved oligomeric Golgi complex subunit 1	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR003392 all species →	Family	Protein patched/dispatched	Interproscan
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR033467 all species →	Domain	Tesmin/TSO1-like CXC domain	Interproscan
IPR003131 all species →	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR003972 all species →	Family	Potassium channel, voltage dependent, Kv1	Interproscan
IPR003968 all species →	Family	Potassium channel, voltage dependent, Kv	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR006068 all species →	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR042178 all species →	Homologous_superfamily	Serpin superfamily, domain 1	Interproscan
IPR042185 all species →	Homologous_superfamily	Serpin superfamily, domain 2	Interproscan
IPR000215 all species →	Family	Serpin family	Interproscan
IPR036186 all species →	Homologous_superfamily	Serpin superfamily	Interproscan
IPR023796 all species →	Domain	Serpin domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR020479 all species →	Domain	Homeobox domain, metazoa	Interproscan
IPR046327 all species →	Family	Homeobox protein Hox-A1/B1/D1	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051921 all species →	Family	ABC transporter osmolyte uptake ATP-binding protein	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22938 all species →	ZINC FINGER PROTEIN 598	Interproscan
PTHR31658 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR45727 all species →	NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1	Interproscan
PTHR46704 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR11537 all species →	VOLTAGE-GATED POTASSIUM CHANNEL	Interproscan
PTHR11461 all species →	SERINE PROTEASE INHIBITOR, SERPIN	Interproscan
PTHR45946 all species →	HOMEOBOX PROTEIN ROUGH-RELATED	Interproscan
PTHR43869 all species →	GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003905 all species →	Molecular Function	alkylbase DNA N-glycosylase activity	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0072344 all species →	Biological Process	rescue of stalled ribosome	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015918 all species →	Biological Process	sterol transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0008076 all species →	Cellular Component	voltage-gated potassium channel complex	Interproscan
GO:0005251 all species →	Molecular Function	delayed rectifier potassium channel activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0004867 all species →	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02000	proV; glycine betaine/proline transport system ATP-binding protein	EC:7.6.2.9	Transporters	ko02000	deepkoala
K04874	KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1	-	Ion channels	ko04040	deepkoala
K12385	NPC1; Niemann-Pick C1 protein	-	Transporters	ko02000	deepkoala
K13963	SERPINB; serpin B	-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.