Gene detail

Detailed information of g1530.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAB3996553.1, Retrovirus-related Pol poly from transposon [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q8C7H1	Methylmalonic aciduria type A homolog, mitochondrial OS=Mus musculus OX=10090 GN=Mmaa PE=1 SV=1
Q8IVH4	Methylmalonic aciduria type A protein, mitochondrial OS=Homo sapiens OX=9606 GN=MMAA PE=1 SV=1
Q22111	Methylmalonic aciduria type A homolog, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=mmaa-1 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF03221	HTH_Tnp_Tc5	Tc5 transposase DNA-binding domain	Domain	Interproscan
PF03184	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF12146	Hydrolase_4	Serine aminopeptidase, S33	Family	Interproscan
PF03308	MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	Domain	Interproscan
PF13517	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan
PF01079	Hint	Hint module	Family	Interproscan
PF02390	Methyltransf_4	Putative methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050863	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR006600	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR004875	Domain	DDE superfamily endonuclease domain	Interproscan
IPR022742	Domain	Serine aminopeptidase, S33	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR005129	Family	SIMIBI class G3E GTPase, ArgK/MeaB	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR050387	Family	Hedgehog Signaling	Interproscan
IPR001767	Domain	Hedgehog protein, Hint domain	Interproscan
IPR036844	Homologous_superfamily	Hint domain superfamily	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR003358	Family	tRNA (guanine-N-7) methyltransferase, Trmb type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19303	TRANSPOSON	Interproscan
PTHR12277	ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23408	METHYLMALONYL-COA MUTASE	Interproscan
PTHR45460	SIMILAR TO CYSTEINE PROTEINASE	Interproscan
PTHR47266	ENDONUCLEASE-RELATED	Interproscan
PTHR10159	DUAL SPECIFICITY PROTEIN PHOSPHATASE	Interproscan
PTHR11889	HEDGEHOG	Interproscan
PTHR23417	3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0002084	Biological Process	protein depalmitoylation	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008474	Molecular Function	palmitoyl-(protein) hydrolase activity	Interproscan
GO:0010008	Cellular Component	endosome membrane	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0004721	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0008330	Molecular Function	protein tyrosine/threonine phosphatase activity	Interproscan
GO:0017017	Molecular Function	MAP kinase tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0033550	Molecular Function	MAP kinase tyrosine phosphatase activity	Interproscan
GO:0043409	Biological Process	negative regulation of MAPK cascade	Interproscan
GO:0016540	Biological Process	protein autoprocessing	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:0008176	Molecular Function	tRNA (guanine(46)-N7)-methyltransferase activity	Interproscan
GO:0030488	Biological Process	tRNA methylation	Interproscan
GO:0036265	Biological Process	RNA (guanine-N7)-methylation	Interproscan
GO:0043527	Cellular Component	tRNA methyltransferase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14165	K14165; atypical dual specificity phosphatase	EC:3.1.3.16 EC:3.1.3.48	Cobalamin transport and metabolism	ko04980	deepkoala
			Peptidases and inhibitors	ko01002	deepkoala
			Protein phosphatases and associated proteins	ko01009	deepkoala