Gene detail

Detailed information of g1537.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3166353.1, unnamed protein product [Porites lobata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91YR7	Pre-mRNA-processing factor 6 OS=Mus musculus OX=10090 GN=Prpf6 PE=1 SV=1
A1A5S1	Pre-mRNA-processing factor 6 OS=Rattus norvegicus OX=10116 GN=Prpf6 PE=1 SV=1
Q2KJJ0	Pre-mRNA-processing factor 6 OS=Bos taurus OX=9913 GN=PRPF6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000016 (this species only)
Orthogroup (gene family)	OG0000308 (this species only)
Orthogroup (gene family)	OG0000473 (this species only)
Orthogroup (gene family)	OG0000521 (this species only)
Orthogroup (gene family)	OG0002444 (this species only)
Orthogroup (gene family)	OG0004674 (this species only)
Orthogroup (gene family)	OG0015706 (this species only)
Orthogroup (gene family)	OG0029676 (this species only)
Orthogroup (gene family)	OG0172836 (this species only)
Orthogroup (gene family)	OG0173531 (this species only)
Transcription factor family	Miscellaneous · all TF in this species
Transcription factor family	RXR-like · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF06424 all species →	PRP1_N	PRP1 splicing factor, N-terminal	Domain	Interproscan
PF15787 all species →	DUF4704	Neurobeachin/BDCP, DUF4704 alpha solenoid region	Repeat	Interproscan
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF03128 all species →	CXCXC	CXCXC repeat	Repeat	Interproscan
PF00105 all species →	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan
PF00104 all species →	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045075 all species →	Family	Pre-mRNA-splicing factor Syf1-like	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR010491 all species →	Domain	PRP1 splicing factor, N-terminal	Interproscan
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR051944 all species →	Family	BEACH domain-containing protein	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR031570 all species →	Domain	Neurobeachin/BDCP, DUF4704	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR004153 all species →	Repeat	CXCXC repeat	Interproscan
IPR001628 all species →	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR000536 all species →	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR035500 all species →	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR050274 all species →	Family	Nuclear hormone receptor family NR2 subfamily	Interproscan
IPR013088 all species →	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR001723 all species →	Family	Nuclear hormone receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11246 all species →	PRE-MRNA SPLICING FACTOR	Interproscan
PTHR46108 all species →	BLUE CHEESE	Interproscan
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR11633 all species →	PLATELET-DERIVED GROWTH FACTOR	Interproscan
PTHR24083 all species →	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000244 all species →	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0007508 all species →	Biological Process	larval heart development	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0061343 all species →	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0008284 all species →	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0031954 all species →	Biological Process	positive regulation of protein autophosphorylation	Interproscan
GO:0070851 all species →	Molecular Function	growth factor receptor binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0004879 all species →	Molecular Function	nuclear receptor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12855	PRPF6, PRP6; pre-mRNA-processing factor 6	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.