Detailed information of g1537.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3166353.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q91YR7Pre-mRNA-processing factor 6 OS=Mus musculus OX=10090 GN=Prpf6 PE=1 SV=1
A1A5S1Pre-mRNA-processing factor 6 OS=Rattus norvegicus OX=10116 GN=Prpf6 PE=1 SV=1
Q2KJJ0Pre-mRNA-processing factor 6 OS=Bos taurus OX=9913 GN=PRPF6 PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyMiscellaneous
Transcription Factors FamilyRXR-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13432TPR_16Tetratricopeptide repeatRepeatInterproscan
PF14559TPR_19Tetratricopeptide repeatRepeatInterproscan
PF06424PRP1_NPRP1 splicing factor, N-terminalDomainInterproscan
PF15787DUF4704Neurobeachin/BDCP, DUF4704 alpha solenoid regionRepeatInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF03128CXCXCCXCXC repeatRepeatInterproscan
PF00105zf-C4Zinc finger, C4 type (two domains)DomainInterproscan
PF00104Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR045075FamilyPre-mRNA-splicing factor Syf1-likeInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR010491DomainPRP1 splicing factor, N-terminalInterproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan
IPR051944FamilyBEACH domain-containing proteinInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR031570DomainNeurobeachin/BDCP, DUF4704Interproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR029034Homologous_superfamilyCystine-knot cytokineInterproscan
IPR004153RepeatCXCXC repeatInterproscan
IPR001628DomainZinc finger, nuclear hormone receptor-typeInterproscan
IPR000536DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR035500Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan
IPR050274FamilyNuclear hormone receptor family NR2 subfamilyInterproscan
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR001723FamilyNuclear hormone receptorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11246PRE-MRNA SPLICING FACTORInterproscan
PTHR46108BLUE CHEESEInterproscan
PTHR33395TRANSCRIPTASE, PUTATIVE-RELATED-RELATEDInterproscan
PTHR11633PLATELET-DERIVED GROWTH FACTORInterproscan
PTHR24083NUCLEAR HORMONE RECEPTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000244Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0007508Biological Processlarval heart developmentInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0061343Biological Processcell adhesion involved in heart morphogenesisInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0008284Biological Processpositive regulation of cell population proliferationInterproscan
GO:0031954Biological Processpositive regulation of protein autophosphorylationInterproscan
GO:0070851Molecular Functiongrowth factor receptor bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0004879Molecular Functionnuclear receptor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0048856Biological Processanatomical structure developmentInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12855PRPF6, PRP6; pre-mRNA-processing factor 6-Spliceosomeko03041deepkoala

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