Gene detail

Detailed information of g1541.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3105569.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5RDY7	Guanine nucleotide-binding protein subunit beta-5 OS=Pongo abelii OX=9601 GN=GNB5 PE=2 SV=1
Q6PNB6	Guanine nucleotide-binding protein subunit beta-5 OS=Oryctolagus cuniculus OX=9986 GN=GNB5 PE=2 SV=1
Q80ZD0	Guanine nucleotide-binding protein subunit beta-5 OS=Tamias striatus OX=45474 GN=GNB5 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01549	ShK	ShK domain-like	Domain	Interproscan
PF01471	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan
PF00413	Peptidase_M10	Matrixin	Domain	Interproscan
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF13359	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF13894	zf-C2H2_4	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033739	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR036365	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR021190	Family	Peptidase M10A	Interproscan
IPR003582	Domain	ShKT domain	Interproscan
IPR002477	Domain	Peptidoglycan binding-like	Interproscan
IPR001818	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR027806	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR016346	Family	Guanine nucleotide-binding protein, beta subunit	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR038983	Family	C2 domain-containing protein 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201	MATRIX METALLOPROTEINASE	Interproscan
PTHR45695	LEUCOKININ RECEPTOR-RELATED	Interproscan
PTHR23080	THAP DOMAIN PROTEIN	Interproscan
PTHR46704	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR19850	GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA	Interproscan
PTHR38681	RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED	Interproscan
PTHR24408	ZINC FINGER PROTEIN	Interproscan
PTHR37412	C2 DOMAIN-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030574	Biological Process	collagen catabolic process	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005834	Cellular Component	heterotrimeric G-protein complex	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007212	Biological Process	G protein-coupled dopamine receptor signaling pathway	Interproscan
GO:0030159	Molecular Function	signaling receptor complex adaptor activity	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005544	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0010828	Biological Process	positive regulation of D-glucose transmembrane transport	Interproscan
GO:0031340	Biological Process	positive regulation of vesicle fusion	Interproscan
GO:0065002	Biological Process	intracellular protein transmembrane transport	Interproscan
GO:0072659	Biological Process	protein localization to plasma membrane	Interproscan
GO:0090314	Biological Process	positive regulation of protein targeting to membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala