Genomic Location: :...
NR annotation: CAB3998328.1, transposase [Paramuricea clavata]
| CDS | |||||
| Transcript |
| Protein |
| Uniprot term | Description |
|---|---|
| Q95SX7 | Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1 |
| Q9NBX4 | Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1 |
| Q9ZDB6 | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=mtaB PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04055 | Radical_SAM | Radical SAM superfamily | Domain | Interproscan |
| PF00919 | UPF0004 | Uncharacterized protein family UPF0004 | Family | Interproscan |
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF07690 | MFS_1 | Major Facilitator Superfamily | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005839 | Family | Methylthiotransferase | Interproscan |
| IPR029057 | Homologous_superfamily | Phosphoribosyltransferase-like | Interproscan |
| IPR038135 | Homologous_superfamily | Methylthiotransferase, N-terminal domain superfamily | Interproscan |
| IPR013848 | Domain | Methylthiotransferase, N-terminal | Interproscan |
| IPR006638 | Domain | Elp3/MiaA/NifB-like, radical SAM core domain | Interproscan |
| IPR002792 | Domain | TRAM domain | Interproscan |
| IPR007197 | Domain | Radical SAM | Interproscan |
| IPR023404 | Homologous_superfamily | Radical SAM, alpha/beta horseshoe | Interproscan |
| IPR020612 | Conserved_site | Methylthiotransferase, conserved site | Interproscan |
| IPR006467 | Family | MiaB-like tRNA modifying enzyme, bacteria | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR036691 | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR036259 | Homologous_superfamily | MFS transporter superfamily | Interproscan |
| IPR011701 | Family | Major facilitator superfamily | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR037190 | Homologous_superfamily | LIS1, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11918 | RADICAL SAM PROTEINS | Interproscan |
| PTHR31511 | PROTEIN CBG23764 | Interproscan |
| PTHR47501 | TRANSPOSASE-RELATED | Interproscan |
| PTHR46670 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0006400 | Biological Process | tRNA modification | Interproscan |
| GO:0016740 | Molecular Function | transferase activity | Interproscan |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| GO:0035596 | Molecular Function | methylthiotransferase activity | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0035598 | Molecular Function | N6-threonylcarbomyladenosine methylthiotransferase activity | Interproscan |
| GO:0035600 | Biological Process | tRNA methylthiolation | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0022857 | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0055085 | Biological Process | transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K09230 | SCAN; SCAN domain-containing zinc finger protein | - | Transfer RNA biogenesis | ko03016 | deepkoala |
| Transcription factors | ko03000 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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