Detailed information of g1553.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047145195.1, nucleolar RNA helicase 2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9NR30Nucleolar RNA helicase 2 OS=Homo sapiens OX=9606 GN=DDX21 PE=1 SV=5
Q3B8Q1Nucleolar RNA helicase 2 OS=Rattus norvegicus OX=10116 GN=Ddx21 PE=2 SV=1
Q9JIK5Nucleolar RNA helicase 2 OS=Mus musculus OX=10090 GN=Ddx21 PE=1 SV=3
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03028Dynein_heavyDynein heavy chain region D6 P-loop domain DomainInterproscan
PF18198AAA_lid_11Dynein heavy chain AAA lid domainDomainInterproscan
PF18199Dynein_CDynein heavy chain C-terminal domainDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF08152GUCTGUCT (NUC152) domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF01067Calpain_IIICalpain large subunit, domain IIIDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026983FamilyDynein heavy chainInterproscan
IPR004273DomainDynein heavy chain region D6 P-loop domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR042219Homologous_superfamilyDynein heavy chain AAA lid domain superfamilyInterproscan
IPR041658DomainDynein heavy chain AAA lid domainInterproscan
IPR041228DomainDynein heavy chain, C-terminal domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR034085DomainTOG domainInterproscan
IPR012562DomainGUCTInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR050079FamilyDEAD box RNA helicaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR036213Homologous_superfamilyCalpain large subunit, domain III superfamilyInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR022684FamilyPeptidase C2, calpain familyInterproscan
IPR050420FamilyCalpainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR022683DomainPeptidase C2, calpain, domain IIIInterproscan
IPR022682DomainPeptidase C2, calpain, large subunit, domain IIIInterproscan
IPR033883DomainCalpain subdomain IIIInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46961DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEINInterproscan
PTHR23235KRUEPPEL-LIKE TRANSCRIPTION FACTORInterproscan
PTHR21567CLASPInterproscan
PTHR47959ATP-DEPENDENT RNA HELICASE RHLE-RELATEDInterproscan
PTHR10183CALPAINInterproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0030286Cellular Componentdynein complexInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0008569Molecular Functionminus-end-directed microtubule motor activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000226Biological Processmicrotubule cytoskeleton organizationInterproscan
GO:0005881Cellular Componentcytoplasmic microtubuleInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0004198Molecular Functioncalcium-dependent cysteine-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K16911DDX21; ATP-dependent RNA helicase DDX21EC:5.6.2.7
Chromosome and associated proteinsko03036deepkoala

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