Gene detail

Detailed information of g1554.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: TSK58201.1, Exostosin-like 3 [Bagarius yarrelli]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WVL6	Exostosin-like 3 OS=Mus musculus OX=10090 GN=Extl3 PE=1 SV=2
O43909	Exostosin-like 3 OS=Homo sapiens OX=9606 GN=EXTL3 PE=1 SV=1
Q9XZ08	Exostosin-3 OS=Drosophila melanogaster OX=7227 GN=botv PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000006 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000049 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000113 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000213 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000549 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000631 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001311 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004059 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005843 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09258 all species →	Glyco_transf_64	Glycosyl transferase family 64 domain	Domain	Interproscan
PF03016 all species →	Exostosin	Exostosin family	Family	Interproscan
PF00188 all species →	CAP	Cysteine-rich secretory protein family	Domain	Interproscan
PF02366 all species →	PMT	Dolichyl-phosphate-mannose-protein mannosyltransferase	Family	Interproscan
PF02815 all species →	MIR	MIR domain	Domain	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF04037 all species →	DUF382	Domain of unknown function (DUF382)	Family	Interproscan
PF04046 all species →	PSP	PSP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015338 all species →	Domain	Glycosyl transferase 64 domain	Interproscan
IPR040911 all species →	Domain	Exostosin, GT47 domain	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR004263 all species →	Family	Exostosin-like	Interproscan
IPR035940 all species →	Homologous_superfamily	CAP superfamily	Interproscan
IPR014044 all species →	Domain	CAP domain	Interproscan
IPR001283 all species →	Family	Cysteine-rich secretory protein-related	Interproscan
IPR018244 all species →	Conserved_site	Allergen V5/Tpx-1-related, conserved site	Interproscan
IPR034113 all species →	Domain	Golgi-associated plant pathogenesis-related protein 1, SCP domain	Interproscan
IPR036300 all species →	Homologous_superfamily	Mir domain superfamily	Interproscan
IPR027005 all species →	Family	Glycosyltransferase 39-like	Interproscan
IPR003342 all species →	Domain	Glycosyl transferase family 39/83	Interproscan
IPR016093 all species →	Domain	MIR motif	Interproscan
IPR052717 all species →	Family	Vacuolar processing and transposase activity regulators	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR051068 all species →	Family	Major Facilitator Superfamily Domain-Containing Protein	Interproscan
IPR006568 all species →	Domain	PSP, proline-rich	Interproscan
IPR007180 all species →	Domain	Domain of unknown function DUF382	Interproscan
IPR052584 all species →	Family	Pre-mRNA Spliceosomal U2 snRNP Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48261 all species →	ACETYLGLUCOSAMINYLTRANSFERASE	Interproscan
PTHR10334 all species →	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	Interproscan
PTHR10050 all species →	DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE	Interproscan
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR46169 all species →	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23510 all species →	INNER MEMBRANE TRANSPORT PROTEIN YAJR	Interproscan
PTHR12785 all species →	SPLICING FACTOR 3B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0004169 all species →	Molecular Function	dolichyl-phosphate-mannose-protein mannosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0006493 all species →	Biological Process	protein O-linked glycosylation	Interproscan
GO:0007508 all species →	Biological Process	larval heart development	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0061343 all species →	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12307	MSFD8, CLN7; MFS transporter, ceroid-lipofuscinosis neuronal protein 7	-	Transporters	ko02000	deepkoala
K12829	SF3B2, SAP145, CUS1; splicing factor 3B subunit 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →