Detailed information of g156.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020912336.1, protocadherin Fat 4 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q99PF4Cadherin-23 OS=Mus musculus OX=10090 GN=Cdh23 PE=1 SV=2
P58365Cadherin-23 OS=Rattus norvegicus OX=10116 GN=Cdh23 PE=2 SV=1
Q9H251Cadherin-23 OS=Homo sapiens OX=9606 GN=CDH23 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF03981Ubiq_cyt_C_chapUbiquinol-cytochrome C chaperone FamilyInterproscan
PF21292EME1-MUS81_CEME1/MUS81, C-terminalDomainInterproscan
PF04939RRS1Ribosome biogenesis regulatory protein (RRS1)FamilyInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF12330Haspin_kinaseHaspin like kinase domainFamilyInterproscan
PF00028CadherinCadherin domainDomainInterproscan
PF08623TIP120TATA-binding protein interacting (TIP20)RepeatInterproscan
PF21208euk_SelB_IIISelenocysteine-specific elongation factor, eukaryotes, 3rd domainDomainInterproscan
PF21131eEFSec_4theEFSec C-terminal RIFT domainDomainInterproscan
PF03144GTP_EFTU_D2Elongation factor Tu domain 2DomainInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR007129FamilyUbiquinol-cytochrome c chaperone, CBP3Interproscan
IPR021150DomainUbiquinol-cytochrome c chaperoneInterproscan
IPR042530Homologous_superfamilyEME1/EME2, C-terminal domainInterproscan
IPR007023FamilyRibosomal biogenesis regulatory proteinInterproscan
IPR033310FamilyMms4/EME1/EME2Interproscan
IPR000719DomainProtein kinase domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR050108FamilyCyclin-dependent kinaseInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR052343FamilyDiverse Retrotransposon and Effector-Associated ProteinInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR050971FamilyCadherin domain-containing proteinInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR039852FamilyCullin-associated NEDD8-dissociated protein 1/2Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR013932DomainTATA-binding protein interacting (TIP20)Interproscan
IPR049393DomainSelenocysteine-specific elongation factor, 3rd domainInterproscan
IPR050055FamilyElongation factor Tu GTPaseInterproscan
IPR009000Homologous_superfamilyTranslation protein, beta-barrel domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR049394DomainSelenocysteine-specific elongation factor, C-terminal RIFT domainInterproscan
IPR004161DomainTranslation elongation factor EFTu-like, domain 2Interproscan
IPR051068FamilyMajor Facilitator Superfamily Domain-Containing ProteinInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR12184UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 FAMILY MEMBERInterproscan
PTHR21077EME1 PROTEINInterproscan
PTHR24056CELL DIVISION PROTEIN KINASEInterproscan
PTHR46890NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATEDInterproscan
PTHR24025DESMOGLEIN FAMILY MEMBERInterproscan
PTHR12696TIP120Interproscan
PTHR43721ELONGATION FACTOR TU-RELATEDInterproscan
PTHR35169FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46113SNAC DOMAIN-CONTAINING PROTEINInterproscan
PTHR23510INNER MEMBRANE TRANSPORT PROTEIN YAJRInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0034551Biological Processmitochondrial respiratory chain complex III assemblyInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0042254Biological Processribosome biogenesisInterproscan
GO:0000712Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0008821Molecular Functioncrossover junction DNA endonuclease activityInterproscan
GO:0031297Biological Processreplication fork processingInterproscan
GO:0031573Biological Processmitotic intra-S DNA damage checkpoint signalingInterproscan
GO:0048476Cellular ComponentHolliday junction resolvase complexInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0000307Cellular Componentcyclin-dependent protein kinase holoenzyme complexInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0008024Cellular Componentcyclin/CDK positive transcription elongation factor complexInterproscan
GO:0008353Molecular FunctionRNA polymerase II CTD heptapeptide repeat kinase activityInterproscan
GO:0030332Molecular Functioncyclin bindingInterproscan
GO:0032968Biological Processpositive regulation of transcription elongation by RNA polymerase IIInterproscan
GO:0070816Biological Processobsolete phosphorylation of RNA polymerase II C-terminal domainInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005911Cellular Componentcell-cell junctionInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0010265Biological ProcessSCF complex assemblyInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0001514Biological Processselenocysteine incorporationInterproscan
GO:0003746Molecular Functiontranslation elongation factor activityInterproscan
GO:0006414Biological Processtranslational elongationInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0006810Biological ProcesstransportInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02211CDK9; cyclin-dependent kinase 9EC:2.7.11.22
EC:2.7.11.23
Cell adhesion moleculesko04515deepkoala
Transcription machineryko03021deepkoala

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