Detailed information of g1561.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_013415675.1, probable E3 ubiquitin-protein ligase HERC1 [Lingula anatina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q15751Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens OX=9606 GN=HERC1 PE=1 SV=2
Q8CFD5DNA excision repair protein ERCC-8 OS=Mus musculus OX=10090 GN=Ercc8 PE=1 SV=2
Q13216DNA excision repair protein ERCC-8 OS=Homo sapiens OX=9606 GN=ERCC8 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12146Hydrolase_4Serine aminopeptidase, S33FamilyInterproscan
PF00676E1_dhDehydrogenase E1 componentFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF01505VaultMajor Vault Protein repeat domainDomainInterproscan
PF05186Dpy-30Dpy-30 motifMotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050266FamilyAB hydrolase superfamilyInterproscan
IPR029058Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR022742DomainSerine aminopeptidase, S33Interproscan
IPR000073DomainAlpha/beta hydrolase fold-1Interproscan
IPR029061Homologous_superfamilyThiamin diphosphate-binding foldInterproscan
IPR011603Family2-oxoglutarate dehydrogenase E1 componentInterproscan
IPR001017DomainDehydrogenase, E1 componentInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR042238FamilyDNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1Interproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR002499RepeatMajor vault protein, N-terminalInterproscan
IPR043023Homologous_superfamilyMajor vault protein repeat domain superfamilyInterproscan
IPR039059FamilyMajor vault proteinInterproscan
IPR041139DomainMajor vault protein repeat domainInterproscan
IPR047499DomainAdenylate kinase 7, dimerization/docking domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR007858Conserved_siteDpy-30 motifInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43798MONOACYLGLYCEROL LIPASEInterproscan
PTHR231522-OXOGLUTARATE DEHYDROGENASEInterproscan
PTHR46202DNA EXCISION REPAIR PROTEIN ERCC-8Interproscan
PTHR14165MAJOR VAULT PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004591Molecular Functionoxoglutarate dehydrogenase (succinyl-transferring) activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006099Biological Processtricarboxylic acid cycleInterproscan
GO:0016624Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptorInterproscan
GO:0030976Molecular Functionthiamine pyrophosphate bindingInterproscan
GO:0045252Cellular Componentoxoglutarate dehydrogenase complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000109Cellular Componentnucleotide-excision repair complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0006283Biological Processtranscription-coupled nucleotide-excision repairInterproscan
GO:0031464Cellular ComponentCul4A-RING E3 ubiquitin ligase complexInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10570ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8-DNA repair and recombination proteinsko03400deepkoala

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