Gene detail

Detailed information of g1562.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_002162828.1, eukaryotic translation initiation factor 5 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59325	Eukaryotic translation initiation factor 5 OS=Mus musculus OX=10090 GN=Eif5 PE=1 SV=1
Q07205	Eukaryotic translation initiation factor 5 OS=Rattus norvegicus OX=10116 GN=Eif5 PE=1 SV=1
P55010	Eukaryotic translation initiation factor 5 OS=Homo sapiens OX=9606 GN=EIF5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000057 (this species only)
Orthogroup (gene family)	OG0000207 (this species only)
Orthogroup (gene family)	OG0000444 (this species only)
Orthogroup (gene family)	OG0000603 (this species only)
Orthogroup (gene family)	OG0002555 (this species only)
Orthogroup (gene family)	OG0008361 (this species only)
Orthogroup (gene family)	OG0016718 (this species only)
Orthogroup (gene family)	OG0019274 (this species only)
Orthogroup (gene family)	OG0171515 (this species only)
Orthogroup (gene family)	OG0173895 (this species only)
Orthogroup (gene family)	OG0174332 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF01873 all species →	eIF-5_eIF-2B	Domain found in IF2B/IF5	Family	Interproscan
PF02020 all species →	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR050496 all species →	Family	SNF2/RAD54 Helicase and DNA Repair	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR050348 all species →	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR016189 all species →	Homologous_superfamily	Translation initiation factor IF2/IF5, N-terminal	Interproscan
IPR002735 all species →	Domain	Translation initiation factor IF2/IF5 domain	Interproscan
IPR003307 all species →	Domain	W2 domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR045196 all species →	Family	Translation initiation factor IF2/IF5	Interproscan
IPR016190 all species →	Homologous_superfamily	Translation initiation factor IF2/IF5, zinc-binding	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45629 all species →	SNF2/RAD54 FAMILY MEMBER	Interproscan
PTHR19134 all species →	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan
PTHR23001 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR	Interproscan
PTHR47022 all species →	BTB AND MATH DOMAIN-CONTAINING PROTEIN 36-RELATED	Interproscan
PTHR45695 all species →	LEUCOKININ RECEPTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0001732 all species →	Biological Process	formation of cytoplasmic translation initiation complex	Interproscan
GO:0005092 all species →	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0071074 all species →	Molecular Function	eukaryotic initiation factor eIF2 binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00546	HNMT; histamine N-methyltransferase	EC:2.1.1.8	Exosome	ko04147	deepkoala
K03262	EIF5; translation initiation factor 5	-	Translation factors	ko03012	deepkoala
K14165	K14165; atypical dual specificity phosphatase	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.