Detailed information of g157.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047129998.1, TBC1 domain family member 23 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7SXV1TBC1 domain family member 23 OS=Danio rerio OX=7955 GN=tbc1d23 PE=2 SV=1
Q6NRC7TBC1 domain family member 23 OS=Xenopus laevis OX=8355 GN=tbc1d23 PE=2 SV=1
Q5R8I6TBC1 domain family member 23 OS=Pongo abelii OX=9601 GN=TBC1D23 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18199Dynein_CDynein heavy chain C-terminal domainDomainInterproscan
PF12780AAA_8P-loop containing dynein motor region D4DomainInterproscan
PF17857AAA_lid_1AAA+ lid domainDomainInterproscan
PF18198AAA_lid_11Dynein heavy chain AAA lid domainDomainInterproscan
PF12781AAA_9ATP-binding dynein motor regionDomainInterproscan
PF03028Dynein_heavyDynein heavy chain region D6 P-loop domain DomainInterproscan
PF12777MTMicrotubule-binding stalk of dynein motorDomainInterproscan
PF00339Arrestin_NArrestin (or S-antigen), N-terminal domainDomainInterproscan
PF02752Arrestin_CArrestin (or S-antigen), C-terminal domainDomainInterproscan
PF00795CN_hydrolaseCarbon-nitrogen hydrolaseFamilyInterproscan
PF00581RhodaneseRhodanese-like domainDomainInterproscan
PF18876AFF4_CHDAFF4, C-terminal homology domainDomainInterproscan
PF06093Spt4Spt4/RpoE2 zinc fingerDomainInterproscan
PF01082Cu2_monooxygenCopper type II ascorbate-dependent monooxygenase, N-terminal domainDomainInterproscan
PF03351DOMONDOMON domainDomainInterproscan
PF03712Cu2_monoox_CCopper type II ascorbate-dependent monooxygenase, C-terminal domainDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041228DomainDynein heavy chain, C-terminal domainInterproscan
IPR024317DomainDynein heavy chain, AAA module D4Interproscan
IPR026983FamilyDynein heavy chainInterproscan
IPR041589DomainDynein heavy chain 3, AAA+ lid domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR041658DomainDynein heavy chain AAA lid domainInterproscan
IPR042219Homologous_superfamilyDynein heavy chain AAA lid domain superfamilyInterproscan
IPR035706DomainDynein heavy chain, ATP-binding dynein motor regionInterproscan
IPR004273DomainDynein heavy chain region D6 P-loop domainInterproscan
IPR043160Homologous_superfamilyDynein heavy chain, C-terminal domain, barrel regionInterproscan
IPR024743DomainDynein heavy chain, coiled coil stalkInterproscan
IPR011021DomainArrestin-like, N-terminalInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR011022DomainArrestin C-terminal-like domainInterproscan
IPR014752Homologous_superfamilyArrestin-like, C-terminalInterproscan
IPR050357FamilyArrestin domain-containing proteinInterproscan
IPR036526Homologous_superfamilyCarbon-nitrogen hydrolase superfamilyInterproscan
IPR003010DomainCarbon-nitrogen hydrolaseInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001763DomainRhodanese-like domainInterproscan
IPR039755FamilyTBC1 domain family member 23Interproscan
IPR036873Homologous_superfamilyRhodanese-like domain superfamilyInterproscan
IPR043640DomainAF4/FMR2, C-terminal homology domainInterproscan
IPR007797FamilyAF4/FMR2 familyInterproscan
IPR022800DomainSpt4/RpoE2 zinc fingerInterproscan
IPR009287FamilyTranscription initiation Spt4Interproscan
IPR038510Homologous_superfamilySpt4 superfamilyInterproscan
IPR029040Homologous_superfamilyRNA polymerase subunit RPABC4/transcription elongation factor Spt4Interproscan
IPR005018DomainDOMON domainInterproscan
IPR000945FamilyDopamine beta-hydroxylase-likeInterproscan
IPR000323DomainCopper type II, ascorbate-dependent monooxygenase, N-terminalInterproscan
IPR008977Homologous_superfamilyPHM/PNGase F domain superfamilyInterproscan
IPR024548DomainCopper type II ascorbate-dependent monooxygenase, C-terminalInterproscan
IPR045266DomainCopper-dependent monooxygenases, DOMON domainInterproscan
IPR014784Homologous_superfamilyCopper type II, ascorbate-dependent monooxygenase-like, C-terminalInterproscan
IPR028460FamilyTyramine beta-hydroxylase/Dopamine beta-hydroxylaseInterproscan
IPR036939Homologous_superfamilyCopper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034393FamilyTatSF1-likeInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR034392DomainTatSF1-like, RNA recognition motif 1Interproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR050327FamilyProton-linked Monocarboxylate TransporterInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45703DYNEIN HEAVY CHAINInterproscan
PTHR11188ARRESTIN DOMAIN CONTAINING PROTEINInterproscan
PTHR23088NITRILASE-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR13297UNCHARACTERIZEDInterproscan
PTHR10528AF4/FMR2 FAMILY MEMBERInterproscan
PTHR12882SUPPRESSOR OF TY 4Interproscan
PTHR10157DOPAMINE BETA HYDROXYLASE RELATEDInterproscan
PTHR15608SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2Interproscan
PTHR11360MONOCARBOXYLATE TRANSPORTERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0030286Cellular Componentdynein complexInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0008569Molecular Functionminus-end-directed microtubule motor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0015031Biological Processprotein transportInterproscan
GO:0006807Biological Processobsolete nitrogen compound metabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005802Cellular Componenttrans-Golgi networkInterproscan
GO:0042147Biological Processretrograde transport, endosome to GolgiInterproscan
GO:0099041Biological Processvesicle tethering to GolgiInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0032783Cellular Componentsuper elongation complexInterproscan
GO:0000993Molecular FunctionRNA polymerase II complex bindingInterproscan
GO:0006325Biological Processchromatin organizationInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0032044Cellular ComponentDSIF complexInterproscan
GO:0034243Biological Processregulation of transcription elongation by RNA polymerase IIInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan
GO:0004500Molecular Functiondopamine beta-monooxygenase activityInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0006589Biological Processoctopamine biosynthetic processInterproscan
GO:0030667Cellular Componentsecretory granule membraneInterproscan
GO:0042420Biological Processdopamine catabolic processInterproscan
GO:0042421Biological Processnorepinephrine biosynthetic processInterproscan
GO:0004497Molecular Functionmonooxygenase activityInterproscan
GO:0005507Molecular Functioncopper ion bindingInterproscan
GO:0016715Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygenInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005684Cellular ComponentU2-type spliceosomal complexInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0008028Molecular Functionmonocarboxylic acid transmembrane transporter activityInterproscan
GO:0016021Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13093HTATSF1; HIV Tat-specific factor 1-Enzymes with EC numbers-deepkoala
Cytoskeleton proteinsko04812deepkoala
Messenger RNA biogenesisko03019deepkoala
Spliceosomeko03041deepkoala

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