Detailed information of g1571.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: RXN13646.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Labeo rohita]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
P0CV72Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04558tRNA_synt_1c_R1Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 FamilyInterproscan
PF00749tRNA-synt_1ctRNA synthetases class I (E and Q), catalytic domainDomainInterproscan
PF04557tRNA_synt_1c_R2Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 FamilyInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan
PF00067p450Cytochrome P450DomainInterproscan
PF00766ETF_alphaElectron transfer flavoprotein FAD-binding domainDomainInterproscan
PF01012ETFElectron transfer flavoprotein domainDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR007639DomainGlutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminalInterproscan
IPR042559Homologous_superfamilyGlutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 2Interproscan
IPR000924FamilyGlutamyl/glutaminyl-tRNA synthetaseInterproscan
IPR020058DomainGlutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domainInterproscan
IPR007638DomainGlutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2Interproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR050132FamilyGlutamine/Glutamate--tRNA LigaseInterproscan
IPR001412Conserved_siteAminoacyl-tRNA synthetase, class I, conserved siteInterproscan
IPR042558Homologous_superfamilyGlutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 1Interproscan
IPR001791DomainLaminin G domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR050372FamilyNeurexin-related cell adhesion and synaptic proteinInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR036396Homologous_superfamilyCytochrome P450 superfamilyInterproscan
IPR050182FamilyCytochrome P450 family 2Interproscan
IPR001128FamilyCytochrome P450Interproscan
IPR017972Conserved_siteCytochrome P450, conserved siteInterproscan
IPR002401FamilyCytochrome P450, E-class, group IInterproscan
IPR029035Homologous_superfamilyDHS-like NAD/FAD-binding domain superfamilyInterproscan
IPR018206Conserved_siteElectron transfer flavoprotein subunit alpha, conserved siteInterproscan
IPR014731DomainElectron transfer flavoprotein, alpha subunit, C-terminalInterproscan
IPR014730DomainElectron transfer flavoprotein, alpha/beta-subunit, N-terminalInterproscan
IPR001308FamilyElectron transfer flavoprotein alpha subunit/FixBInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43097GLUTAMINE-TRNA LIGASEInterproscan
PTHR15036PIKACHURIN-LIKE PROTEINInterproscan
PTHR24300CYTOCHROME P450 508A4-RELATEDInterproscan
PTHR43153ELECTRON TRANSFER FLAVOPROTEIN ALPHAInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0043039Biological ProcesstRNA aminoacylationInterproscan
GO:0004819Molecular Functionglutamine-tRNA ligase activityInterproscan
GO:0006425Biological Processglutaminyl-tRNA aminoacylationInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0017101Cellular Componentaminoacyl-tRNA synthetase multienzyme complexInterproscan
GO:0004497Molecular Functionmonooxygenase activityInterproscan
GO:0005506Molecular Functioniron ion bindingInterproscan
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygenInterproscan
GO:0020037Molecular Functionheme bindingInterproscan
GO:0006082Biological Processorganic acid metabolic processInterproscan
GO:0006805Biological Processxenobiotic metabolic processInterproscan
GO:0016712Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygenInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0009055Molecular Functionelectron transfer activityInterproscan
GO:0033539Biological Processfatty acid beta-oxidation using acyl-CoA dehydrogenaseInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03522fixB, etfA; electron transfer flavoprotein alpha subunit-Exosomeko04147deepkoala

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