Detailed information of g1576.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: APW77279.1, SoxB1 [Hydractinia echinata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P48430Transcription factor SOX-2 OS=Gallus gallus OX=9031 GN=SOX2 PE=1 SV=1
Q6P0E1Transcription factor Sox-2 OS=Danio rerio OX=7955 GN=sox2 PE=2 SV=1
Q6RVD7Transcription factor Sox-21-B OS=Danio rerio OX=7955 GN=sox21b PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01131Topoisom_bacDNA topoisomeraseFamilyInterproscan
PF01396zf-C4_TopoisomTopoisomerase DNA binding C4 zinc fingerDomainInterproscan
PF01751ToprimToprim domainFamilyInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF21355TRAF-mep_MATHTRAF/meprin, MATH domainDomainInterproscan
PF11904GPCR_chapero_1GPCR-chaperoneDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013825Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 2Interproscan
IPR006171DomainTOPRIM domainInterproscan
IPR003601DomainDNA topoisomerase, type IA, domain 2Interproscan
IPR003602DomainDNA topoisomerase, type IA, DNA-binding domainInterproscan
IPR023406Active_siteDNA topoisomerase, type IA, active siteInterproscan
IPR013497DomainDNA topoisomerase, type IA, centralInterproscan
IPR013826Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 3Interproscan
IPR013498DomainDNA topoisomerase, type IA, zn fingerInterproscan
IPR023405Homologous_superfamilyDNA topoisomerase, type IA, core domainInterproscan
IPR013824Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 1Interproscan
IPR000380FamilyDNA topoisomerase, type IAInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR050140FamilySRY-related HMG-box transcription factorsInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR008974Homologous_superfamilyTRAF-likeInterproscan
IPR002083DomainMATH/TRAF domainInterproscan
IPR012227FamilyTNF receptor-associated factor TRAF, metazoaInterproscan
IPR049342DomainTRAF1-6/MEP1A/B-like, MATH domainInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR003903Conserved_siteUbiquitin interacting motifInterproscan
IPR021832FamilyAnkyrin repeat domain-containing protein 13Interproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11390PROKARYOTIC DNA TOPOISOMERASEInterproscan
PTHR10270SOX TRANSCRIPTION FACTORInterproscan
PTHR10131TNF RECEPTOR ASSOCIATED FACTORInterproscan
PTHR12447ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003916Molecular FunctionDNA topoisomerase activityInterproscan
GO:0006265Biological ProcessDNA topological changeInterproscan
GO:0003917Molecular FunctionDNA topoisomerase type I (single strand cut, ATP-independent) activityInterproscan
GO:0005694Cellular ComponentchromosomeInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0033209Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03165TOP3; DNA topoisomerase IIIEC:5.6.2.1
Transcription factorsko03000deepkoala
Membrane traffickingko04131deepkoala
DNA repair and recombination proteinsko03400deepkoala

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