Detailed information of g15768.t1 in Acropora digitifera

Genomic Location: chr7Alt:18402433...18417086
NR annotation: XP_015754310.1, PREDICTED: phthiocerol synthesis polyketide synthase type I PpsC-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7TXL8Phenolphthiocerol/phthiocerol polyketide synthase subunit C OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=ppsC PE=1 SV=1
P96202Phenolphthiocerol/phthiocerol polyketide synthase subunit C OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ppsC PE=1 SV=2
A0R1E8Mycocerosic acid synthase-like polyketide synthase OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=pks5 PE=1 SV=1
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00550
all species →
PP-bindingPhosphopantetheine attachment siteDomainInterproscan
PF00975
all species →
ThioesteraseThioesterase domainDomainInterproscan
PF00698
all species →
Acyl_transf_1Acyl transferase domainDomainInterproscan
PF21089
all species →
PKS_DH_NPolyketide synthase dehydratase domainDomainInterproscan
PF16197
all species →
KAsynt_C_assocKetoacyl-synthetase C-terminal extensionFamilyInterproscan
PF08659
all species →
KRKR domainFamilyInterproscan
PF00109
all species →
ketoacyl-syntBeta-ketoacyl synthase, N-terminal domainDomainInterproscan
PF02801
all species →
Ketoacyl-synt_CBeta-ketoacyl synthase, C-terminal domainDomainInterproscan
PF14765
all species →
PS-DHPolyketide synthase dehydratase N-terminal domainDomainInterproscan
PF02460
all species →
PatchedPatched familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049900
all species →
DomainPolyketide/metazoan fatty acid synthase, dehydratase domainInterproscan
IPR029058
all species →
Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR050091
all species →
FamilyPolyketide and Nonribosomal Peptide Biosynthesis EnzymesInterproscan
IPR009081
all species →
DomainPhosphopantetheine binding ACP domainInterproscan
IPR016039
all species →
Homologous_superfamilyThiolase-likeInterproscan
IPR011032
all species →
Homologous_superfamilyGroES-like superfamilyInterproscan
IPR020841
all species →
DomainPolyketide synthase, beta-ketoacyl synthase domainInterproscan
IPR001031
all species →
DomainThioesteraseInterproscan
IPR036291
all species →
Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR014043
all species →
DomainAcyl transferaseInterproscan
IPR049552
all species →
DomainPolyketide synthase, dehydratase domain, N-terminalInterproscan
IPR016036
all species →
Homologous_superfamilyMalonyl-CoA ACP transacylase, ACP-bindingInterproscan
IPR001227
all species →
Homologous_superfamilyAcyl transferase domain superfamilyInterproscan
IPR032821
all species →
DomainPolyketide synthase, C-terminal extensionInterproscan
IPR018201
all species →
Active_siteBeta-ketoacyl synthase, active siteInterproscan
IPR013968
all species →
DomainPolyketide synthase, ketoreductase domainInterproscan
IPR014030
all species →
DomainBeta-ketoacyl synthase, N-terminalInterproscan
IPR042104
all species →
Homologous_superfamilyPolyketide synthase, dehydratase domain superfamilyInterproscan
IPR014031
all species →
DomainBeta-ketoacyl synthase, C-terminalInterproscan
IPR049551
all species →
DomainPolyketide synthase, dehydratase domain, C-terminalInterproscan
IPR000731
all species →
DomainSterol-sensing domainInterproscan
IPR016035
all species →
Homologous_superfamilyAcyl transferase/acyl hydrolase/lysophospholipaseInterproscan
IPR003392
all species →
FamilyProtein patched/dispatchedInterproscan
IPR020807
all species →
DomainPolyketide synthase, dehydratase domainInterproscan
IPR036736
all species →
Homologous_superfamilyACP-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43775
all species →
FATTY ACID SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004312
all species →
Molecular Functionfatty acid synthase activityInterproscan
GO:0006633
all species →
Biological Processfatty acid biosynthetic processInterproscan
GO:0016746
all species →
Molecular Functionacyltransferase activityInterproscan
GO:0009058
all species →
Biological Processbiosynthetic processInterproscan
GO:0016740
all species →
Molecular Functiontransferase activityInterproscan
GO:0004315
all species →
Molecular Function3-oxoacyl-[acyl-carrier-protein] synthase activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g15768.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g15768.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples
39TPM > 0
1Conditions
48.4Max TPM
23.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Coral branch 39 39 23.23 48.40

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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