Gene detail

Detailed information of g158.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_028408338.1, medium-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Dendronephthya gigantea]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VSA3	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Mcad PE=1 SV=1
P11310	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACADM PE=1 SV=1
A5A6I0	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes OX=9598 GN=ACADM PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000050 (this species only)
Orthogroup (gene family)	OG0001366 (this species only)
Orthogroup (gene family)	OG0001529 (this species only)
Orthogroup (gene family)	OG0003755 (this species only)
Orthogroup (gene family)	OG0005758 (this species only)
Orthogroup (gene family)	OG0006403 (this species only)
Orthogroup (gene family)	OG0006635 (this species only)
Orthogroup (gene family)	OG0006836 (this species only)
Orthogroup (gene family)	OG0009088 (this species only)
Orthogroup (gene family)	OG0009093 (this species only)
Orthogroup (gene family)	OG0010604 (this species only)
Orthogroup (gene family)	OG0074344 (this species only)
Orthogroup (gene family)	OG0171430 (this species only)
Orthogroup (gene family)	OG0172343 (this species only)
Orthogroup (gene family)	OG0173383 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13359 all species →	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF06638 all species →	Strabismus	Strabismus protein	Family	Interproscan
PF01780 all species →	Ribosomal_L37ae	Ribosomal L37ae protein family	Family	Interproscan
PF00753 all species →	Lactamase_B	Metallo-beta-lactamase superfamily	Domain	Interproscan
PF10996 all species →	Beta-Casp	Beta-Casp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027806 all species →	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR050741 all species →	Family	Acyl-CoA dehydrogenase	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR009539 all species →	Family	Vang-like protein	Interproscan
IPR002674 all species →	Family	Large ribosomal subunit protein eL43	Interproscan
IPR011332 all species →	Homologous_superfamily	Zinc-binding ribosomal protein	Interproscan
IPR011331 all species →	Homologous_superfamily	Large ribosomal subunit protein eL37/eL43	Interproscan
IPR050522 all species →	Family	Eukaryotic ribosomal protein eL43	Interproscan
IPR033536 all species →	Family	Spermatogenesis-associated protein 22	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR050698 all species →	Family	RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR022712 all species →	Domain	Beta-Casp domain	Interproscan
IPR036526 all species →	Homologous_superfamily	Carbon-nitrogen hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22930 all species →	UNCHARACTERIZED	Interproscan
PTHR48083 all species →	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	Interproscan
PTHR24098 all species →	OUTER SEGMENT 5	Interproscan
PTHR20886 all species →	VANG-LIKE PROTEIN	Interproscan
PTHR48129 all species →	60S RIBOSOMAL PROTEIN L37A	Interproscan
PTHR45846 all species →	TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE	Interproscan
PTHR35258 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 22	Interproscan
PTHR11203 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Interproscan
PTHR23088 all species →	NITRILASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0051793 all species →	Biological Process	medium-chain fatty acid catabolic process	Interproscan
GO:0070991 all species →	Molecular Function	medium-chain fatty acyl-CoA dehydrogenase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0001736 all species →	Biological Process	establishment of planar polarity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0060071 all species →	Biological Process	Wnt signaling pathway, planar cell polarity pathway	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0017150 all species →	Molecular Function	tRNA dihydrouridine synthase activity	Interproscan
GO:0000711 all species →	Biological Process	meiotic DNA repair synthesis	Interproscan
GO:0007129 all species →	Biological Process	homologous chromosome pairing at meiosis	Interproscan
GO:0007276 all species →	Biological Process	gamete generation	Interproscan
GO:0051445 all species →	Biological Process	regulation of meiotic cell cycle	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004534 all species →	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006398 all species →	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02921	RP-L37Ae, RPL37A; large subunit ribosomal protein L37Ae	-	Ribosome	ko03011	deepkoala
K04510	VANGL; vang-like	-	Wnt signaling pathway	ko04310	deepkoala
K19678	IFT80; intraflagellar transport protein 80	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.