Gene detail

Detailed information of g158.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_028408338.1, medium-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q9VSA3	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Mcad PE=1 SV=1
P11310	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACADM PE=1 SV=1
A5A6I0	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes OX=9598 GN=ACADM PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13359	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF06638	Strabismus	Strabismus protein	Family	Interproscan
PF01780	Ribosomal_L37ae	Ribosomal L37ae protein family	Family	Interproscan
PF00753	Lactamase_B	Metallo-beta-lactamase superfamily	Domain	Interproscan
PF10996	Beta-Casp	Beta-Casp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027806	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR006089	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR050741	Family	Acyl-CoA dehydrogenase	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR013786	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR037069	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR009539	Family	Vang-like protein	Interproscan
IPR002674	Family	Large ribosomal subunit protein eL43	Interproscan
IPR011332	Homologous_superfamily	Zinc-binding ribosomal protein	Interproscan
IPR011331	Homologous_superfamily	Large ribosomal subunit protein eL37/eL43	Interproscan
IPR050522	Family	Eukaryotic ribosomal protein eL43	Interproscan
IPR033536	Family	Spermatogenesis-associated protein 22	Interproscan
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR050698	Family	RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein	Interproscan
IPR001279	Domain	Metallo-beta-lactamase	Interproscan
IPR022712	Domain	Beta-Casp domain	Interproscan
IPR036526	Homologous_superfamily	Carbon-nitrogen hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22930	UNCHARACTERIZED	Interproscan
PTHR48083	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	Interproscan
PTHR24098	OUTER SEGMENT 5	Interproscan
PTHR20886	VANG-LIKE PROTEIN	Interproscan
PTHR48129	60S RIBOSOMAL PROTEIN L37A	Interproscan
PTHR45846	TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE	Interproscan
PTHR35258	SPERMATOGENESIS-ASSOCIATED PROTEIN 22	Interproscan
PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Interproscan
PTHR23088	NITRILASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0051793	Biological Process	medium-chain fatty acid catabolic process	Interproscan
GO:0070991	Molecular Function	medium-chain fatty acyl-CoA dehydrogenase activity	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0030992	Cellular Component	intraciliary transport particle B	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0001736	Biological Process	establishment of planar polarity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0060071	Biological Process	Wnt signaling pathway, planar cell polarity pathway	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity	Interproscan
GO:0000711	Biological Process	meiotic DNA repair synthesis	Interproscan
GO:0007129	Biological Process	homologous chromosome pairing at meiosis	Interproscan
GO:0007276	Biological Process	gamete generation	Interproscan
GO:0051445	Biological Process	regulation of meiotic cell cycle	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004534	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006398	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02921	RP-L37Ae, RPL37A; large subunit ribosomal protein L37Ae	-	Wnt signaling pathway	ko04310	deepkoala
			Cilium and associated proteins	ko03037	deepkoala
			Ribosome	ko03011	deepkoala