Detailed information of g1587.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_031559808.1, E3 ubiquitin-protein ligase UBR2-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8IWV8E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens OX=9606 GN=UBR2 PE=1 SV=1
Q6WKZ8E3 ubiquitin-protein ligase UBR2 OS=Mus musculus OX=10090 GN=Ubr2 PE=1 SV=2
Q8IWV7E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens OX=9606 GN=UBR1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03638TCRTesmin/TSO1-like CXC domain, cysteine-rich domainDomainInterproscan
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF02932Neur_chan_membNeurotransmitter-gated ion-channel transmembrane regionFamilyInterproscan
PF14768RPA_interact_CReplication protein A interacting C-terminalFamilyInterproscan
PF14766RPA_interact_NReplication protein A interacting N-terminalFamilyInterproscan
PF03104DNA_pol_B_exo1DNA polymerase family B, exonuclease domainFamilyInterproscan
PF02792Mago_nashiMago nashi proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005172DomainCRC domainInterproscan
IPR033467DomainTesmin/TSO1-like CXC domainInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR036719Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR018000Conserved_siteNeurotransmitter-gated ion-channel, conserved siteInterproscan
IPR038050Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR006029DomainNeurotransmitter-gated ion-channel transmembrane domainInterproscan
IPR028156FamilyRPA-interacting proteinInterproscan
IPR028159DomainRPA-interacting protein, C-terminal domainInterproscan
IPR028158DomainRPA-interacting protein, N-terminal domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR006133DomainDNA-directed DNA polymerase, family B, exonuclease domainInterproscan
IPR036605Homologous_superfamilyMago nashi superfamilyInterproscan
IPR004023FamilyMago nashi proteinInterproscan
IPR039164FamilyE3 ubiquitin-protein ligase UBR1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47018CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR18945NEUROTRANSMITTER GATED ION CHANNELInterproscan
PTHR31742RPA-INTERACTING PROTEIN RPAINInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR45861DNA POLYMERASE ALPHA CATALYTIC SUBUNITInterproscan
PTHR12638PROTEIN MAGO NASHI HOMOLOGInterproscan
PTHR21497UBIQUITIN LIGASE E3 ALPHA-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0005231Molecular Functionexcitatory extracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0007268Biological Processchemical synaptic transmissionInterproscan
GO:0030594Molecular Functionneurotransmitter receptor activityInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0045202Cellular ComponentsynapseInterproscan
GO:0050877Biological Processnervous system processInterproscan
GO:1904315Molecular Functiontransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potentialInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0003688Molecular FunctionDNA replication origin bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0005658Cellular Componentalpha DNA polymerase:primase complexInterproscan
GO:0006272Biological Processleading strand elongationInterproscan
GO:0006273Biological Processlagging strand elongationInterproscan
GO:1902975Biological Processmitotic DNA replication initiationInterproscan
GO:0008380Biological ProcessRNA splicingInterproscan
GO:0035145Cellular Componentexon-exon junction complexInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071596Biological Processubiquitin-dependent protein catabolic process via the N-end rule pathwayInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04804CHRNA2; nicotinic acetylcholine receptor alpha-2-Spliceosomeko03041deepkoala
Ion channelsko04040deepkoala

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