Detailed information of g1590.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAF1440973.1, unnamed protein product [Rotaria sp. Silwood1]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6V0I7Protocadherin Fat 4 OS=Homo sapiens OX=9606 GN=FAT4 PE=1 SV=2
Q2PZL6Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
Q6V1P9Protocadherin-23 OS=Homo sapiens OX=9606 GN=DCHS2 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12947EGF_3EGF domainDomainInterproscan
PF00028CadherinCadherin domainDomainInterproscan
PF00008EGFEGF-like domainDomainInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan
PF03221HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan
PF00022ActinActinFamilyInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00628PHDPHD-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR050174FamilyProtocadherin/Cadherin-related Cell AdhesionInterproscan
IPR024731DomainEGF domainInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR006600DomainHTH CenpB-type DNA-binding domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR004000FamilyActin familyInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR042858FamilyDnaJ homolog subfamily C member 8Interproscan
IPR036869Homologous_superfamilyChaperone J-domain superfamilyInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR047184FamilyKN motif and ankyrin repeat domain-containing protein 1-4Interproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR052285FamilyNuclear exosome targeting complex subunitInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR037869FamilySpp1/CFP1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24028CADHERIN-87AInterproscan
PTHR33802SI:CH211-161H7.5-RELATEDInterproscan
PTHR15606DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATEDInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR24168KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAININGInterproscan
PTHR13798RNA BINDING MOTIF RBM PROTEIN -RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46174CXXC-TYPE ZINC FINGER PROTEIN 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0030837Biological Processnegative regulation of actin filament polymerizationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0048188Cellular ComponentSet1C/COMPASS complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09528DNAJC8; DnaJ homolog subfamily C member 8-DNA repair and recombination proteinsko03400deepkoala
Spliceosomeko03041deepkoala
Chaperones and folding catalystsko03110deepkoala

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