Gene detail

Detailed information of g1593.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_046847023.1, LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46 [Xenia sp. Carnegie-2017]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62780	Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Q569Z5	Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Q4TVV3	Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000077 (this species only)
Orthogroup (gene family)	OG0000122 (this species only)
Orthogroup (gene family)	OG0000732 (this species only)
Orthogroup (gene family)	OG0001494 (this species only)
Orthogroup (gene family)	OG0004806 (this species only)
Orthogroup (gene family)	OG0007814 (this species only)
Orthogroup (gene family)	OG0008810 (this species only)
Orthogroup (gene family)	OG0010071 (this species only)
Orthogroup (gene family)	OG0019284 (this species only)
Orthogroup (gene family)	OG0172395 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF02213 all species →	GYF	GYF domain	Domain	Interproscan
PF00728 all species →	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF09788 all species →	Tmemb_55A	Transmembrane protein 55A	Family	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF10545 all species →	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan
PF06677 all species →	Auto_anti-p27	Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050145 all species →	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR035445 all species →	Homologous_superfamily	GYF-like domain superfamily	Interproscan
IPR003169 all species →	Domain	GYF domain	Interproscan
IPR039905 all species →	Family	CD2 antigen cytoplasmic tail-binding protein 2/Lin1	Interproscan
IPR038901 all species →	Family	Hexosaminidase D-like	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR015883 all species →	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR019178 all species →	Family	Phosphatidylinositol 4,5-bisphosphate 4-phosphatase	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR006578 all species →	Domain	MADF domain	Interproscan
IPR039353 all species →	Family	Transcription factor Adf-1	Interproscan
IPR051888 all species →	Family	UPF0148 domain-containing protein	Interproscan
IPR009563 all species →	Family	Sjoegren syndrome/scleroderma autoantigen 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23050 all species →	CALCIUM BINDING PROTEIN	Interproscan
PTHR13138 all species →	PROTEIN LIN1	Interproscan
PTHR21040 all species →	UNCHARACTERIZED	Interproscan
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR46670 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR21014 all species →	UNCHARACTERIZED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR12243 all species →	MADF DOMAIN TRANSCRIPTION FACTOR	Interproscan
PTHR16537 all species →	SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0030234 all species →	Molecular Function	enzyme regulator activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan
GO:0015929 all species →	Molecular Function	hexosaminidase activity	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030670 all species →	Cellular Component	phagocytic vesicle membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0034597 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12811	DDX46, PRP5; ATP-dependent RNA helicase DDX46/PRP5	EC:5.6.2.7	Spliceosome	ko03041	deepkoala
K13084	TMEM55; phosphatidylinositol-4,5-bisphosphate 4-phosphatase	EC:3.1.3.78	Phosphatidylinositol signaling system	ko04070	deepkoala
K13099	CD2BP2, PPP1R59; CD2 antigen cytoplasmic tail-binding protein 2	-	Spliceosome	ko03041	deepkoala
K14459	HEX; hexosaminidase	EC:3.2.1.52	Other glycan degradation	ko00511	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.