Gene detail

Detailed information of g1593.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_046847023.1, LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46 [Xenia sp. Carnegie-2017]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q62780	Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Q569Z5	Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Q4TVV3	Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF02213	GYF	GYF domain	Domain	Interproscan
PF00728	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF09788	Tmemb_55A	Transmembrane protein 55A	Family	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF10545	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan
PF06677	Auto_anti-p27	Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050145	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR035445	Homologous_superfamily	GYF-like domain superfamily	Interproscan
IPR003169	Domain	GYF domain	Interproscan
IPR039905	Family	CD2 antigen cytoplasmic tail-binding protein 2/Lin1	Interproscan
IPR038901	Family	Hexosaminidase D-like	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR015883	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR019178	Family	Phosphatidylinositol 4,5-bisphosphate 4-phosphatase	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR006578	Domain	MADF domain	Interproscan
IPR039353	Family	Transcription factor Adf-1	Interproscan
IPR051888	Family	UPF0148 domain-containing protein	Interproscan
IPR009563	Family	Sjoegren syndrome/scleroderma autoantigen 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23050	CALCIUM BINDING PROTEIN	Interproscan
PTHR13138	PROTEIN LIN1	Interproscan
PTHR21040	UNCHARACTERIZED	Interproscan
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR21014	UNCHARACTERIZED	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR12243	MADF DOMAIN TRANSCRIPTION FACTOR	Interproscan
PTHR16537	SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0030234	Molecular Function	enzyme regulator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005682	Cellular Component	U5 snRNP	Interproscan
GO:0015929	Molecular Function	hexosaminidase activity	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0030670	Cellular Component	phagocytic vesicle membrane	Interproscan
GO:0031902	Cellular Component	late endosome membrane	Interproscan
GO:0034597	Molecular Function	phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity	Interproscan
GO:0046856	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14459	HEX; hexosaminidase	EC:3.2.1.52	Spliceosome	ko03041	deepkoala
			Spliceosome	ko03041	deepkoala
			Phosphatidylinositol signaling system	ko04070	deepkoala
			Other glycan degradation	ko00511	deepkoala