Gene detail

Detailed information of g1598.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: QYA72948.1, complement protein C3 [Rhopilema esculentum]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IZJ3	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8 OS=Homo sapiens OX=9606 GN=CPAMD8 PE=1 SV=2
Q00685	Complement C3 (Fragment) OS=Lethenteron camtschaticum OX=980415 GN=C3 PE=2 SV=1
Q8R422	CD109 antigen OS=Mus musculus OX=10090 GN=Cd109 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000114 (this species only)
Orthogroup (gene family)	OG0000840 (this species only)
Orthogroup (gene family)	OG0001437 (this species only)
Orthogroup (gene family)	OG0002363 (this species only)
Orthogroup (gene family)	OG0005675 (this species only)
Orthogroup (gene family)	OG0006042 (this species only)
Orthogroup (gene family)	OG0009778 (this species only)
Orthogroup (gene family)	OG0036202 (this species only)
Orthogroup (gene family)	OG0080454 (this species only)
Orthogroup (gene family)	OG0174108 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00867 all species →	XPG_I	XPG I-region	Family	Interproscan
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01759 all species →	NTR	UNC-6/NTR/C345C module	Domain	Interproscan
PF07677 all species →	A2M_recep	A-macroglobulin receptor binding domain	Domain	Interproscan
PF07678 all species →	TED_complement	A-macroglobulin TED domain	Repeat	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF01105 all species →	EMP24_GP25L	emp24/gp25L/p24 family/GOLD	Domain	Interproscan
PF01702 all species →	TGT	Queuine tRNA-ribosyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006086 all species →	Domain	XPG-I domain	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR017998 all species →	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019742 all species →	Conserved_site	Alpha-2-macroglobulin, conserved site	Interproscan
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR008930 all species →	Homologous_superfamily	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Interproscan
IPR018933 all species →	Domain	Netrin module, non-TIMP type	Interproscan
IPR036595 all species →	Homologous_superfamily	Alpha-macroglobulin, receptor-binding domain superfamily	Interproscan
IPR047565 all species →	Conserved_site	Alpha-macroglobulin-like, thiol-ester bond-forming region	Interproscan
IPR009048 all species →	Domain	Alpha-macroglobulin, receptor-binding	Interproscan
IPR001134 all species →	Domain	Netrin domain	Interproscan
IPR050473 all species →	Family	Alpha-2-macroglobulin/Complement system	Interproscan
IPR011626 all species →	Domain	Alpha-macroglobulin-like, TED domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR009038 all species →	Domain	GOLD domain	Interproscan
IPR015720 all species →	Family	Transmembrane emp24 domain-containing protein	Interproscan
IPR036598 all species →	Homologous_superfamily	GOLD domain superfamily	Interproscan
IPR036511 all species →	Homologous_superfamily	Queuine tRNA-ribosyltransferase-like	Interproscan
IPR002616 all species →	Domain	tRNA-guanine(15) transglycosylase-like	Interproscan
IPR050852 all species →	Family	Queuine tRNA-ribosyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081 all species →	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan
PTHR11353 all species →	CHAPERONIN	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR11412 all species →	MACROGLOBULIN / COMPLEMENT	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR22811 all species →	TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46064 all species →	QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0000400 all species →	Molecular Function	four-way junction DNA binding	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005832 all species →	Cellular Component	chaperonin-containing T-complex	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005793 all species →	Cellular Component	endoplasmic reticulum-Golgi intermediate compartment	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0030134 all species →	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0016763 all species →	Molecular Function	pentosyltransferase activity	Interproscan
GO:0101030 all species →	Biological Process	tRNA-guanine transglycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15407	QTRT2, QTRTD1; queuine tRNA-ribosyltransferase accessory subunit	-	Transfer RNA biogenesis	ko03016	deepkoala
K20349	TMED7; p24 family protein gamma-3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.