Detailed information of g1600.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_020604700.1, acid-sensing ion channel 4-like [Orbicella faveolata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

 Sequence
Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q708S3Acid-sensing ion channel 4-B OS=Danio rerio OX=7955 GN=asic4b PE=1 SV=1
Q708S4Acid-sensing ion channel 4-A OS=Danio rerio OX=7955 GN=asic4a PE=1 SV=1
Q9JHS6Acid-sensing ion channel 4 OS=Rattus norvegicus OX=10116 GN=Asic4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000000 (this species only)
Orthogroup (gene family)OG0000002 (this species only)
Orthogroup (gene family)OG0000211 (this species only)
Orthogroup (gene family)OG0003669 (this species only)
Orthogroup (gene family)OG0005432 (this species only)
Orthogroup (gene family)OG0009266 (this species only)
Orthogroup (gene family)OG0029675 (this species only)
Orthogroup (gene family)OG0080436 (this species only)
Orthogroup (gene family)OG0080657 (this species only)
Orthogroup (gene family)OG0171465 (this species only)
Orthogroup (gene family)OG0173599 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16605
all species →		LSM_int_assocLSM-interacting associated unstructured DisorderedInterproscan
PF05843
all species →		SufSuppressor of forked protein (Suf)RepeatInterproscan
PF00076
all species →		RRM_1RNA recognition motifDomainInterproscan
PF00858
all species →		ASCAmiloride-sensitive sodium channelFamilyInterproscan
PF15165
all species →		REC114-likeMeiotic recombination protein REC114-likeFamilyInterproscan
PF00612
all species →		IQIQ calmodulin-binding motifMotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR000504
all species →		DomainRNA recognition motif domainInterproscan
IPR035979
all species →		Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034217
all species →		DomainSART3, RNA recognition motif 1Interproscan
IPR008847
all species →		DomainSuppressor of forkedInterproscan
IPR012677
all species →		Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR003107
all species →		RepeatHAT (Half-A-TPR) repeatInterproscan
IPR001873
all species →		FamilyEpithelial sodium channelInterproscan
IPR029168
all species →		FamilyMeiotic recombination protein REC114-likeInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000048
all species →		Binding_siteIQ motif, EF-hand binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17204
all species →		PRE-MRNA PROCESSING PROTEIN PRP39-RELATEDInterproscan
PTHR11690
all species →		AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATEDInterproscan
PTHR34921
all species →		MEIOTIC RECOMBINATION PROTEIN REC114Interproscan
PTHR47331
all species →		PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0005272
all species →		Molecular Functionsodium channel activityInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0006814
all species →		Biological Processsodium ion transportInterproscan
GO:0015280
all species →		Molecular Functionligand-gated sodium channel activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0035725
all species →		Biological Processsodium ion transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22611SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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