Detailed information of g1600.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020604700.1, acid-sensing ion channel 4-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q708S3Acid-sensing ion channel 4-B OS=Danio rerio OX=7955 GN=asic4b PE=1 SV=1
Q708S4Acid-sensing ion channel 4-A OS=Danio rerio OX=7955 GN=asic4a PE=1 SV=1
Q9JHS6Acid-sensing ion channel 4 OS=Rattus norvegicus OX=10116 GN=Asic4 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16605LSM_int_assocLSM-interacting associated unstructured DisorderedInterproscan
PF05843SufSuppressor of forked protein (Suf)RepeatInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00858ASCAmiloride-sensitive sodium channelFamilyInterproscan
PF15165REC114-likeMeiotic recombination protein REC114-likeFamilyInterproscan
PF00612IQIQ calmodulin-binding motifMotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034217DomainSART3, RNA recognition motif 1Interproscan
IPR008847DomainSuppressor of forkedInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan
IPR001873FamilyEpithelial sodium channelInterproscan
IPR029168FamilyMeiotic recombination protein REC114-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000048Binding_siteIQ motif, EF-hand binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17204PRE-MRNA PROCESSING PROTEIN PRP39-RELATEDInterproscan
PTHR11690AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATEDInterproscan
PTHR34921MEIOTIC RECOMBINATION PROTEIN REC114Interproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0005272Molecular Functionsodium channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0006814Biological Processsodium ion transportInterproscan
GO:0015280Molecular Functionligand-gated sodium channel activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22611SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3-Chromosome and associated proteinsko03036deepkoala

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