Gene detail

Detailed information of g16062.t2 in Acropora digitifera

Genomic Location: chr7Alt:24008560...24014392
NR annotation: XP_029209206.2, tetratricopeptide repeat protein 28-like [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16062.t2

ATGAAGAAGATTGTCAAGAACATTGCGAAAAAGCTGGGGTACCGAGAAGCTCCCTTTACGCCTGACAGCTTTCAAGAAGCCCTTGACAAGAACGAAAAACAATTGAAAATTGCCAGGGAAACAGACGACCGCGCCGGAGAAGGAAAAGCCTATTACAATCTTGGGGTTGCTTACGAATCCCACGGCGATTTCCCAAAAGCTATCGAGTGTTATGAAAAGAGTTTGAACATATCCAGGGAAGCTGGCGACCGGGCCAAAGAAGGAGGTGTCTATTTCAGCCTTGGGTATGCTTACGAATCCCACGGCGACTTCCCAAAAGCTATCGAGTGTTATGAAAAGAGTTTGAAAATACACAGGCAACCAGGCGACCGGGATAGAGAAGGAGATGTCTACTTCAATCTTGGGAATGCTTACGACTCCCATGATGATTTCCCAAAAGCTATCGAGTGTTATGAAAAGAGTTTGAACATATCCAGGAAAGCAGGCGACCGAGCTAGAGAAGGAGATGTGTATCTAAATCTTGGGATCGCTTACAATTCCCACGGTGATTTCCCAAAAGCTATTGAGTGTTATGAAAAGAGTTTGAACATATTCAGGCAAGCAGGCGACCGGGCTAGAGAAGGAGGTGTTTATTTCTGTCTTGGGTATGCTTACGACTCCCACGGCGACTTCCCAACAGCTATCGAGTGTTATGAAAAGAGTTTGAACATATACAGGCAAGCAGGTGACCGGGATAGGGAAGGAGGTGTTTATTTCAGTCTTGGGTATGCTTACGACTTCCACGGCAATTTCCCAAAAGCTATCGAGTGTTATGAAACGAGTTTGAACATATACAGGCAAGCAGGCGACCGGGCGAGAGAAGGAGATGTCTATTTCAATCTTGGGAGTGCTTACGAGTCCCACGACGATTTCCCAAAAGCTATCGAGTGTTATGAAAAGTGTTTGGACATATCCAGACAAGAAGGCGACCCAACTAGAGAAGGAGATGTCTATCTAAATCTTGGGATCGCTTACGACTCCCACGGCGATTTCCCAAAAGCTATTGAGTGTTATGGAAACAGTTTGAACATATTCAGGCAAGCAGGCAACCGGGGTAAAGAAGGAGAATCCTATTACAATCTTGGGATCGCTTACAACTCCCACGGCGATTTCCCAAAAGCTATCGAGTGTTTTGAAAAGACTTTGAACATATACAGGCAAGCAGGAGACCGGGATGGAGAAGGAAATGTCTATTACAATCTTGGGATCGCTTACAAATCCCACGGAGATTTCCCAAAAGCTATCGAGTGTTATGAAAAGAGTTCGAACATACACAGGCAATCAGGAGACCGTGATGGACAAGGAGATGTCTATTTCAATCTTGGGATCGCTTACCAATCCCAGGGCGATTTCCCAAAGGCTATCCAGTGTTATGAAAAGAGTTTGAACATTTCCCGAGAAGCAGGTAACCGGGCTACAGAAAAAAGGGCCTGTCTTAAACTTGAAGACGCTTACCTATCCCGCAGGGATTTTCCAAAGGCTATCGAGTGTTACAGAGAGAGTTTGAACATGGCCAGAGAAGCAGGTTCTCGGAGTGGAGTATCTTGGCCTTTGGCAGTTGGCGATGTTTCAAAAGCTCCTGAATATCAAGAAAGGCATTTCAAAATTGTCAGAGAAGTGGGTGGTCTTACTGAGGAGGTAGCAGAGGCAGGACCTTTCAATATCCACGGTCGTCCACTTTTAACTGGGAAACTTGATATTTGCAATATCCCGGATGAGAACGCGAGAGACCGCACAAAGGGTGAAGACAAGTCAGTTACTCTTCCTGGCAATGTCGTTGAATCACTAGTGTCGCCGTCTTGTGATCCAAAAGAAATTGTCCTTAAACTGAAAGAAAGCCTACACTTGGACCAAGCGGATTTGGAGAAACCCAGCGCGGAAACAACGAGAATGATCCGTTGTCTTGCAGCAACAGCTAAGGATTCAAACCGGATTGATGTTGTTAAACACCTGAGAGAAATCATGCCAGCAGGGACAACTGGTCCATTGTTGCCTGGGAAACTTGATATTTGTGATATCCCAGTTAAGAATAGAAGACATCTTACAATAGATTTGACCGTCGGAGGCCGGTGGAAAGATGTTGCAGACAGACTGGGCTTAAGGGGAAGTGAGATCCAATTTCTTGATGAGAGATATCCGAATCCCAGTGAAGCTACATTGGACTTTGTGGCTCATTATCAGGGCATGAATGTGGATGGTCTGTACGATGTGTTAACTGAGTGTGGGATGCCTATGCTGGCTGATATTTTGTGA

Transcript

chr7Alt.g16062.t2

AAAGGAAGAGCTAAGTAACTTTTTTTTTCCTTTTAGTAACTGAATTGGCTGCGTAATACGTCTTAGTCATTCTCAGTATAGCATGAAAACAGTATATTATGTTTTCACACCCCCATTTCATTGTTAAAGCTTTACGTTTCTATTAGAGAATGAAAATTCAAGACAAGAGACACGCTTTACAGTTACATTGAAAGAGACGGTGGTATTCTTTAGACTAACTATCTTAAACTAAAAGTCGCATTTTCAACGCCTACAAAGCAAAATTTCGGTCCTTCAAATTGCGTTATTGATTTGCTCAGAATAATTGAAGGGAATTTCGATCTTAGAATCAGTTAAATATATATTTGGAAAACCATTTCACATTAATGAAGAAGATTGTCAAGAACATTGCGAAAAAGCTGGGGTACCGAGAAGCTCCCTTTACGCCTGACAGCTTTCAAGAAGCCCTTGACAAGAACGAAAAACAATTGAAAATTGCCAGGGAAACAGACGACCGCGCCGGAGAAGGAAAAGCCTATTACAATCTTGGGGTTGCTTACGAATCCCACGGCGATTTCCCAAAAGCTATCGAGTGTTATGAAAAGAGTTTGAACATATCCAGGGAAGCTGGCGACCGGGCCAAAGAAGGAGGTGTCTATTTCAGCCTTGGGTATGCTTACGAATCCCACGGCGACTTCCCAAAAGCTATCGAGTGTTATGAAAAGAGTTTGAAAATACACAGGCAACCAGGCGACCGGGATAGAGAAGGAGATGTCTACTTCAATCTTGGGAATGCTTACGACTCCCATGATGATTTCCCAAAAGCTATCGAGTGTTATGAAAAGAGTTTGAACATATCCAGGAAAGCAGGCGACCGAGCTAGAGAAGGAGATGTGTATCTAAATCTTGGGATCGCTTACAATTCCCACGGTGATTTCCCAAAAGCTATTGAGTGTTATGAAAAGAGTTTGAACATATTCAGGCAAGCAGGCGACCGGGCTAGAGAAGGAGGTGTTTATTTCTGTCTTGGGTATGCTTACGACTCCCACGGCGACTTCCCAACAGCTATCGAGTGTTATGAAAAGAGTTTGAACATATACAGGCAAGCAGGTGACCGGGATAGGGAAGGAGGTGTTTATTTCAGTCTTGGGTATGCTTACGACTTCCACGGCAATTTCCCAAAAGCTATCGAGTGTTATGAAACGAGTTTGAACATATACAGGCAAGCAGGCGACCGGGCGAGAGAAGGAGATGTCTATTTCAATCTTGGGAGTGCTTACGAGTCCCACGACGATTTCCCAAAAGCTATCGAGTGTTATGAAAAGTGTTTGGACATATCCAGACAAGAAGGCGACCCAACTAGAGAAGGAGATGTCTATCTAAATCTTGGGATCGCTTACGACTCCCACGGCGATTTCCCAAAAGCTATTGAGTGTTATGGAAACAGTTTGAACATATTCAGGCAAGCAGGCAACCGGGGTAAAGAAGGAGAATCCTATTACAATCTTGGGATCGCTTACAACTCCCACGGCGATTTCCCAAAAGCTATCGAGTGTTTTGAAAAGACTTTGAACATATACAGGCAAGCAGGAGACCGGGATGGAGAAGGAAATGTCTATTACAATCTTGGGATCGCTTACAAATCCCACGGAGATTTCCCAAAAGCTATCGAGTGTTATGAAAAGAGTTCGAACATACACAGGCAATCAGGAGACCGTGATGGACAAGGAGATGTCTATTTCAATCTTGGGATCGCTTACCAATCCCAGGGCGATTTCCCAAAGGCTATCCAGTGTTATGAAAAGAGTTTGAACATTTCCCGAGAAGCAGGTAACCGGGCTACAGAAAAAAGGGCCTGTCTTAAACTTGAAGACGCTTACCTATCCCGCAGGGATTTTCCAAAGGCTATCGAGTGTTACAGAGAGAGTTTGAACATGGCCAGAGAAGCAGGTTCTCGGAGTGGAGTATCTTGGCCTTTGGCAGTTGGCGATGTTTCAAAAGCTCCTGAATATCAAGAAAGGCATTTCAAAATTGTCAGAGAAGTGGGTGGTCTTACTGAGGAGGTAGCAGAGGCAGGACCTTTCAATATCCACGGTCGTCCACTTTTAACTGGGAAACTTGATATTTGCAATATCCCGGATGAGAACGCGAGAGACCGCACAAAGGGTGAAGACAAGTCAGTTACTCTTCCTGGCAATGTCGTTGAATCACTAGTGTCGCCGTCTTGTGATCCAAAAGAAATTGTCCTTAAACTGAAAGAAAGCCTACACTTGGACCAAGCGGATTTGGAGAAACCCAGCGCGGAAACAACGAGAATGATCCGTTGTCTTGCAGCAACAGCTAAGGATTCAAACCGGATTGATGTTGTTAAACACCTGAGAGAAATCATGCCAGCAGGGACAACTGGTCCATTGTTGCCTGGGAAACTTGATATTTGTGATATCCCAGTTAAGAATAGAAGACATCTTACAATAGATTTGACCGTCGGAGGCCGGTGGAAAGATGTTGCAGACAGACTGGGCTTAAGGGGAAGTGAGATCCAATTTCTTGATGAGAGATATCCGAATCCCAGTGAAGCTACATTGGACTTTGTGGCTCATTATCAGGGCATGAATGTGGATGGTCTGTACGATGTGTTAACTGAGTGTGGGATGCCTATGCTGGCTGATATTTTGTGACCTAAGGTCTGCGTAACCGTTCTTCTTGGAGCCAAGAGCTGTTTTAACCTTTGTTTTTGAGGAAGCCTCCTTAGTAATATGACTGCTGGGTTAGTTTTTCTATTCGATGTTGTCATCTTACAGCAACGTATAAGTATAGGTGTCTACGGCTTGTATTAACCTTATCTTAATGTCAATACGTAACATAGGAAAAGTTCTTAAACAATTAAACAAAGAATAGGAAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13176 all species →	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR006597 all species →	Repeat	Sel1-like repeat	Interproscan
IPR052386 all species →	Family	G-protein-signaling modulator	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954 all species →	LD33695P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965 all species →	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005092 all species →	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07126	K07126; uncharacterized protein	-	Function unknown	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.