Gene detail

Detailed information of g1607.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_031564032.1, hepatocyte growth factor-regulated tyrosine kinase substrate-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
O14964	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens OX=9606 GN=HGS PE=1 SV=1
Q0V8S0	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus OX=9913 GN=HGS PE=2 SV=1
Q99LI8	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus OX=10090 GN=Hgs PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|VHS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan
PF03953	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan
PF02803	Thiolase_C	Thiolase, C-terminal domain	Domain	Interproscan
PF12210	Hrs_helical	Hepatocyte growth factor-regulated tyrosine kinase substrate	Domain	Interproscan
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan
PF00790	VHS	VHS domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR050976	Family	Snake venom C-type lectin-like	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR002453	Family	Beta tubulin	Interproscan
IPR000217	Family	Tubulin	Interproscan
IPR018316	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR037103	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR013838	Binding_site	Beta tubulin, autoregulation binding site	Interproscan
IPR016039	Homologous_superfamily	Thiolase-like	Interproscan
IPR020613	Conserved_site	Thiolase, conserved site	Interproscan
IPR020617	Domain	Thiolase, C-terminal	Interproscan
IPR020610	Active_site	Thiolase, active site	Interproscan
IPR036908	Homologous_superfamily	RlpA-like domain superfamily	Interproscan
IPR036749	Homologous_superfamily	Expansin, cellulose-binding-like domain superfamily	Interproscan
IPR051477	Family	Plant Cell Wall Expansin	Interproscan
IPR024641	Domain	Hepatocyte growth factor-regulated tyrosine kinase substrate, helical domain	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR002014	Domain	VHS domain	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR017073	Family	Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27	Interproscan
IPR003903	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43157	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED	Interproscan
PTHR22991	UNCHARACTERIZED	Interproscan
PTHR11588	TUBULIN	Interproscan
PTHR18919	ACETYL-COA C-ACYLTRANSFERASE	Interproscan
PTHR31836	EXPANSIN-LIKE PROTEIN 2	Interproscan
PTHR46275	HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0003985	Molecular Function	acetyl-CoA C-acetyltransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0031623	Biological Process	receptor internalization	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11153	RDH12; retinol dehydrogenase 12	EC:1.1.1.300	Membrane trafficking	ko04131	deepkoala
			Exosome	ko04147	deepkoala
			Exosome	ko04147	deepkoala
			Retinol metabolism	ko00830	deepkoala