Gene detail

Detailed information of g16136.t1 in Montipora capitata

Genomic Location: Sc0000662:11933...30885
NR annotation: XP_044164686.1, SCL-interrupting locus protein homolog isoform X3 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16136.t1

atgtcacactttgtgagtctgaaagtcagctgtcattctcatgcaggagacaaagagatcattctcaatattaactgtaacacaatctccatggcaacaacaattcaggccacttcagttgcagctgtacccataattcccacagctctggcaaggaatctgtcaggtcctctgagacttggtgaggtgcaaggagtaccaaaaaatgggtatttgactatggataacacaagaaaactactcttgcttttggaatcagatccaaaggcattctccttgccactccttggaatttgggtgagtgggatttacagcatccatcatccatatatttgggcctgctgtttacgtttcatccattgtactgcaattcagcaaaggttgctagctcctccaaacgcctttctacttcttcagtactctccggtaaagagtacacctgaattctgggagtgcagacaagatcagggagattctgagcttaaaatgtttgaattatacagctgttacgaaaaccttcacctggagatttttgtttttccagataaggaagagacttccctctcactcagctttgatgaacatatttcagctgaatgttcacctgatgcctttgcaaatcagctagttcttcaaaaagcacatctaacgataaaagaactgcaaagtccccctcaggaacatctgtcccaaaggattcaacatgaccaagaaaataaccagttcatgctccagagagaaatatcacaaggctttccaaagagaatggttaaagtaaagcaacatacaaattattccgtcatgcaaaatttgccatcaagggaacccctgaaacaaattttagctccaaatcaaacgcagactaaagggaacagcaaccagcacataaagatatccaggaaaccttgtgcactgaaaagtgtaggtgacaaaaaacttcccaaaccgacaagtaagccagagaaaagaaatggtcaccgcgcttccagtttgaattttggggtagatccatctcttaaaaacagtgataaagtacatgaaactggtttaggaaggcaacaaatgaggcaaaacctgccagaaaagaagaaggggggaaatgaacatcttcaaagtaatgcagtaggtaggagacccttggggaattttcaaggaggtgaaaataggccaagacagcaagatagtgttaaagaaaccatatcctttcctttacccaccaaccaagcacagagacctgtcttagaaacagtctttgaagttacaacaccagatggaacattgaacaagaccatggatgaaacagagatagagcgccatataactggaatgagtgagatgtctcaaagtcctttgaatctgcctcactttcaggtggctgtaggtgatgcttatgaggagacttgcactaagaatactgatggttgtcaaaggagcaatgactgtagagaaaggtcaactatgctggtaaccagtggagaagattttaacaaagagaaatcagacaatgttgaagaatgtacatctaacaagattgtagatagtgttgcagaaaaccagttatgtgattcactgggtaccagtctgcagcatgaggagcagaagaagagtatacaaagtcagcaatcaaaaggcatggacaagagcactgttgacaaaagccatgaaggatcacttcaagaagagcaagtagtatttgttgagacagggcagtcaagtgagaaggataaagcaaaagatatcaccactccggatccttatgcacttcttttgagacaagaggctcaactgagactacttcaggaacagatcaaactgttgttgcagcaacaacctaccccactccctaacccaaatgccctacttactcctcctagaactcctcagtttgacagttcctgtcctaatgaaaacagaaaattgcccaatcactcacctgtgtctatggtaacagcatgcaccaacacaggtgagagtttgttacttggaacacccataaagccaaatggcaacaagtcagctgccacatcaccaataaaagaacaagaaatgagtcacaaagaaagatctgaagaactgaatcaacacaactcgaaggaatcacaaagacatgactcatctattaatcctgaagagttgagcaatcagttgctgaacctggatgacccaagtcagaccctagcttcctcactgcatgctgttgacattccaagcttttatgagagtccctctaacagaactagtcccaatcccactcaccaagcacaggactgatcaccagtaagtgaaaggcattggccactacacagatcgctgtcactaagtgccattccagaccatcctcgcatcaactacatgtctttctcagtcgatgaaacccttgatgaagtcttaagtgaagctgatctccatcaactacatgaacttcaaccaattagtactcacagcaacaaaaacactcgtgatagggctgccactttcagtgtatttcaagaggacaagagtattctttccagaaaaggatccgttgaaaaagaccatctgtgtgactctaggtctctaacatcagtggattacacttggaataacttatccatggccactaaggactacttgggcaagtattgcttagccccaagagagcttgtgaaatctggtgactgcagagtggacaagcagctaccagaggcaaaaaatggacaaaaaggaccaaaaacgtcttttgcatcacagggatgtagtgtgccacccagtacaccagagcctgccaaaaagaacgatggtgattcccagattttagacatcacacgactcaagaaactaccaaagttgttttga

Transcript

g16136.t1

ATGTCACACTTTGTGAGTCTGAAAGTCAGCTGTCATTCTCATGCAGGAGACAAAGAGATCATTCTCAATATTAACTGTAACACAATCTCCATGGCAACAACAATTCAGGCCACTTCAGTTGCAGCTGTACCCATAATTCCCACAGCTCTGGCAAGGAATCTGTCAGGTCCTCTGAGACTTGGTGAGGTGCAAGGAGTACCAAAAAATGGGTATTTGACTATGGATAACACAAGAAAACTACTCTTGCTTTTGGAATCAGATCCAAAGGCATTCTCCTTGCCACTCCTTGGAATTTGGGTGAGTGGGATTTACAGCATCCATCATCCATATATTTGGGCCTGCTGTTTACGTTTCATCCATTGTACTGCAATTCAGCAAAGGTTGCTAGCTCCTCCAAACGCCTTTCTACTTCTTCAGTACTCTCCGGTAAAGAGTACACCTGAATTCTGGGAGTGCAGACAAGATCAGGGAGATTCTGAGCTTAAAATGTTTGAATTATACAGCTGTTACGAAAACCTTCACCTGGAGATTTTTGTTTTTCCAGATAAGGAAGAGACTTCCCTCTCACTCAGCTTTGATGAACATATTTCAGCTGAATGTTCACCTGATGCCTTTGCAAATCAGCTAGTTCTTCAAAAAGCACATCTAACGATAAAAGAACTGCAAAGTCCCCCTCAGGAACATCTGTCCCAAAGGATTCAACATGACCAAGAAAATAACCAGTTCATGCTCCAGAGAGAAATATCACAAGGCTTTCCAAAGAGAATGGTTAAAGTAAAGCAACATACAAATTATTCCGTCATGCAAAATTTGCCATCAAGGGAACCCCTGAAACAAATTTTAGCTCCAAATCAAACGCAGACTAAAGGGAACAGCAACCAGCACATAAAGATATCCAGGAAACCTTGTGCACTGAAAAGTGTAGGTGACAAAAAACTTCCCAAACCGACAAGTAAGCCAGAGAAAAGAAATGGTCACCGCGCTTCCAGTTTGAATTTTGGGGTAGATCCATCTCTTAAAAACAGTGATAAAGTACATGAAACTGGTTTAGGAAGGCAACAAATGAGGCAAAACCTGCCAGAAAAGAAGAAGGGGGGAAATGAACATCTTCAAAGTAATGCAGTAGGTAGGAGACCCTTGGGGAATTTTCAAGGAGGTGAAAATAGGCCAAGACAGCAAGATAGTGTTAAAGAAACCATATCCTTTCCTTTACCCACCAACCAAGCACAGAGACCTGTCTTAGAAACAGTCTTTGAAGTTACAACACCAGATGGAACATTGAACAAGACCATGGATGAAACAGAGATAGAGCGCCATATAACTGGAATGAGTGAGATGTCTCAAAGTCCTTTGAATCTGCCTCACTTTCAGGTGGCTGTAGGTGATGCTTATGAGGAGACTTGCACTAAGAATACTGATGGTTGTCAAAGGAGCAATGACTGTAGAGAAAGGTCAACTATGCTGGTAACCAGTGGAGAAGATTTTAACAAAGAGAAATCAGACAATGTTGAAGAATGTACATCTAACAAGATTGTAGATAGTGTTGCAGAAAACCAGTTATGTGATTCACTGGGTACCAGTCTGCAGCATGAGGAGCAGAAGAAGAGTATACAAAGTCAGCAATCAAAAGGCATGGACAAGAGCACTGTTGACAAAAGCCATGAAGGATCACTTCAAGAAGAGCAAGTAGTATTTGTTGAGACAGGGCAGTCAAGTGAGAAGGATAAAGCAAAAGATATCACCACTCCGGATCCTTATGCACTTCTTTTGAGACAAGAGGCTCAACTGAGACTACTTCAGGAACAGatCAAACTGTTGTTGCAGCAACAACCTACCCCACTCCCTAACCCAAATGCCCTACTTACTCCTCCTAGAACTCCTCAGTTTGACAGTTCCTGTCCtaatgaaaacagaaaattgcCCAATCACTCACCTGTGTCTATGGTAACAGCATGCACCAACACAGGTGAGAGTTTGTTACTTGGAACACCCATAAAGCCAAATGGCAACAAGTCAGCTGCCACATCACCAATAAAAGAACAAGAAATGAGTCACAAAGAAAGATCTGAAGAACTGAATCAACACAACTCGAAGGAATCACAAAGACATGACTCATCTATTAATCCTGAAGAGTTGAGCAATCAGTTGCTGAACCTGGATGACCCAAGTCAGACCCTAGCTTCCTCACTGCATGCTGTTGACATTCCAAGCTTTTATGAGAGTCCCTCTAACAGAACTAGTCCCAATCCCACTCACCAAGCACAGGACTGATCACCAGTAAGTGAAAGGCATTGGCCACTACACAGATCGCTGTCACTAAGTGCCATTCCAGACCATCCTCGCATCAACTACATGTCTTTCTCAGTCGATGAAACCCTTGATGAAGTCTTAAGTGAAGCTGATCTCCATCAACTACATGAACTTCAACCAATTAGTACTCACAGCAACAAAAACACTCGTGATAGGGCTGCCACTTTCAGTGTATTTCAAGAGGACAAGAGTATTCTTTCCAGAAAAGGATCCGTTGAAAAAGACCATCTGTGTGACTCTAGGTCTCTAACATCAGTGGATTACACTTGGAATAACTTATCCATGGCCACTAAGGACTACTTGGGCAAGTATTGCTTAGCCCCAAGAGAGCTTGTGAAATCTGGTGACTGCAGAGTGGACAAGCAGCTACCAGaggcaaaaaatggacaaaaaggACCAAAAACGTCTTTTGCATCACAGGGATGTAGTGTGCCACCCAGTACACCAGAGCCTGCCAAAAAGAACGATGGTGATTCCCAGATTTTAGACATCACACGACTCAAGAAACTACCAAAGTTGTTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15468	SCL-interrupting locus protein OS=Homo sapiens OX=9606 GN=STIL PE=1 SV=2
Q60988	SCL-interrupting locus protein homolog OS=Mus musculus OX=10090 GN=Stil PE=1 SV=2
Q4V7H1	SCL-interrupting locus protein homolog OS=Xenopus laevis OX=8355 GN=stil PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15253 all species →	STIL_N	SCL-interrupting locus protein N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026123 all species →	Family	SCL-interrupting locus protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15128 all species →	TAL1 SCL INTERRUPTING LOCUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0051298 all species →	Biological Process	centrosome duplication	Interproscan
GO:0071539 all species →	Biological Process	protein localization to centrosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16724	STIL; SCL-interrupting locus protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g16136.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

111.3Max TPM

41.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	43.27	102.38
whole organisms · low pH treatment	15	15	43.00	111.33
whole organisms · extra low pH treatment pH treatment	12	12	34.92	95.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	102.38
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	100.30
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	97.71
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	97.28
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	77.12
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	76.29
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	73.92
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	66.66
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	42.79
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	27.99
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	19.47
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	16.22
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	16.16
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	15.78
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	15.58
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	14.20
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	13.28
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	12.42
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	10.10
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	7.94
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	5.01
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	111.33
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	101.75
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	93.17
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	85.91
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	75.05
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	69.59
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	15.37
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	15.33
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	12.79
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	12.09
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	11.97
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	11.30
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	10.28
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	10.00
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	9.12
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	95.20
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	79.89
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	75.45
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	74.93
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	15.63
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	15.04
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	13.87
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	12.43
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	11.25
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	10.04
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	8.03
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	7.33

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.