Detailed information of g1620.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: EDO34316.1, predicted protein, partial [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O88703Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Mus musculus OX=10090 GN=Hcn2 PE=1 SV=1
Q9JKA9Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Rattus norvegicus OX=10116 GN=Hcn2 PE=1 SV=4
Q9UL51Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Homo sapiens OX=9606 GN=HCN2 PE=1 SV=3
Gene familySubfamily
Transcription Factors FamilyHMG
Ubiquitin FamilyUBD|Other|SH3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01041DegT_DnrJ_EryC1DegT/DnrJ/EryC1/StrS aminotransferase familyDomainInterproscan
PF15511CENP-T_CCentromere kinetochore component CENP-T histone foldDomainInterproscan
PF02759RUNRUN domainFamilyInterproscan
PF00027cNMP_bindingCyclic nucleotide-binding domainDomainInterproscan
PF00520Ion_transIon transport proteinFamilyInterproscan
PF02214BTB_2BTB/POZ domainDomainInterproscan
PF00018SH3_1SH3 domainDomainInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015422Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR000653FamilyDegT/DnrJ/EryC1/StrS aminotransferaseInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR001951FamilyHistone H4Interproscan
IPR004823DomainTATA box binding protein associated factor (TAF), histone-like fold domainInterproscan
IPR035425DomainCENP-T/Histone H4, histone foldInterproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR019809Conserved_siteHistone H4, conserved siteInterproscan
IPR004012DomainRUN domainInterproscan
IPR037213Homologous_superfamilyRUN domain superfamilyInterproscan
IPR047343FamilyAP-4 complex accessory subunit RUSC1/2Interproscan
IPR000595DomainCyclic nucleotide-binding domainInterproscan
IPR051413FamilyPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channelInterproscan
IPR018488Conserved_siteCyclic nucleotide-binding, conserved siteInterproscan
IPR014710Homologous_superfamilyRmlC-like jelly roll foldInterproscan
IPR018490Homologous_superfamilyCyclic nucleotide-binding domain superfamilyInterproscan
IPR005821DomainIon transport domainInterproscan
IPR003131DomainPotassium channel tetramerisation-type BTB domainInterproscan
IPR027359Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR001452DomainSH3 domainInterproscan
IPR031160DomainF-BAR domainInterproscan
IPR027267Homologous_superfamilyAH/BAR domain superfamilyInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR050342FamilyHigh Mobility Group Box (HMGB)Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30244TRANSAMINASEInterproscan
PTHR10484HISTONE H4Interproscan
PTHR15591RUN AND SH3 DOMAIN CONTAININGInterproscan
PTHR45689I[[H]] CHANNEL, ISOFORM EInterproscan
PTHR11537VOLTAGE-GATED POTASSIUM CHANNELInterproscan
PTHR15735FCH AND DOUBLE SH3 DOMAINS PROTEINInterproscan
PTHR48112HIGH MOBILITY GROUP PROTEIN DSP1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000271Biological Processpolysaccharide biosynthetic processInterproscan
GO:0008483Molecular Functiontransaminase activityInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0031410Cellular Componentcytoplasmic vesicleInterproscan
GO:0003254Biological Processregulation of membrane depolarizationInterproscan
GO:0005249Molecular Functionvoltage-gated potassium channel activityInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan
GO:0071805Biological Processpotassium ion transmembrane transportInterproscan
GO:0098855Cellular ComponentHCN channel complexInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0051260Biological Processprotein homooligomerizationInterproscan
GO:0005251Molecular Functiondelayed rectifier potassium channel activityInterproscan
GO:0008076Cellular Componentvoltage-gated potassium channel complexInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0008301Molecular FunctionDNA binding, bendingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11254H4; histone H4-Chromosome and associated proteinsko03036deepkoala

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