Gene detail

Detailed information of g16253.t1 in Acropora digitifera

Genomic Location: chr7Alt:26875219...26894317
NR annotation: XP_015769282.1, PREDICTED: uncharacterized protein LOC107347823 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16253.t1

ATGAACATACCTGCCCATGCTTCACCAAATTTGCGCATTGGTCGGTCATATGATGCCCAGACTTCAAAGGCTGGTATTGATATTTATCCTGGAAAAATCGAGATTGAAGAGACCAATGTCAACCAGTTCAACTTTGAATACAGAGTCTTAAAAAAAAGCAAAGATACCAAGGACATGCTAAACATATCTGGTGCGCTTTCTCTGAAAGTTAAAGCTGGCCTTGTACCAGTGTCAGGCTCAGGAAAGTATCTTCGTGACAACAAGAAGACCGAGGACACGACAGAGGTGCTTGTCGTATTGAAATGCTTAACGGTTTCTGAGACAATGAGAGGTTTACCGAAGTTGGCGGATGACGTGGCTGGTGGTAAAATCAAACATGGTCTGGGGACACATTACGCGAGAAGTATTACTTATGGCGGAGAATTGGCTGCAAGTCTGTCAATTAAAAACACATCCTCGTCGAAAACACTGGATATACAAGGGCGTGCTTCAGGTGCAGTAAATACTATAGAAGTTGATGTGAGTTTGGATGCCCAATTAAAGAAACTCACAAAGGAATGCTCAGCTTTGTCAGACATATCCATCAAGTATTACTCCACAGATTTGCCATCCAAAGCTCCCACAAATCTGAACGAACTTGTGGAACTGATTAAGGGCTTTCCTTCGAGGTTGGAGAAAATCAACAAAGGCAAGGGGATTCCCCTGGAGTTTGAACTACAACCGATAACTACCGCCCTCCAAATAGAGGGGCCATCCATTTCATATTTACTTCCTCTCAAGGAGGATCAACTGGAACAGTACTATGATGATCTTCGCGCAGCTCAAACTCGACTTAACCTGTACCAGGAAAGCAACGTGGACGAAGACGATGAAGTGTCGAGCTTTAGCGACGGAATCGAGGAAGTCATAGAAAAATTCATGCAAGCTATCAACTCGATAGGATCAAGTGGAGGCTTGGATGAAATGATTAAATCCTGTTTTGACGCTTACCACAAAGCTTTAGGTGGAGGCAAAAGAGCTGGGAAATTCTGTAGAAAATGGGAACAGATTATATCAAAGAAGAAGCCGATTCCACCAATGACAAATATAACGCTCCCTAGGGGAGATCCTCTGACAGTTGTTCTTATCGGAAACACGGGGAATGGAAAGAGTTCTACTGGGAATCAAATACTTGGCCAGAAGCTCTTTGGAGTCAGCGACGGTGTCAAGTCTGACACAGATTCATGTACCCAACAAACTAGAACGAAAGAGAGGAAAATAACAGTGATTGATACTCCTGGCGTTATTGATACAAAAATTGTCAAACAGATGACGAGTATGTGGAGCCAGGCGCAGTACAAAGCTGGATTTAAGAAGGAACTAGAGTCAAGTTTAAAAGAATTGGCAAGATTGTTCCTTTTAGCTCCTGGTGGTTTCAATGCAATCCTTCTCCTTGTGAAGTTTGGCTCTCGATTCACCCGAGACGATAATGACGCATTGCAAATGCTGTTGAAATTCTTTACACCAGACGCCAAGAAATACATGATACTGGTATTGAGCCACGGAGATCAAGCTGAATATAATGCAAGCGAGGAAGGCATCGCCGTTGACGAATACTTGAAAAATTGGATAGGCAAAATGGATGATTGGCTGAAAACGTTTATTCATGATGATCTAAAGGACCGAGTGGTTTTGTTCAACTGCAGGTTGAAGCCAGATAAAGAACCCGAGGCTTACATGAAACAGCTATGCAAATTAATCGAGATGATAGACGAAATTAATAAAGAACAGAAAGTTCCTTTCAAAACAAAATTTACAGACGACAGGGTGACGGACGCGGCGGGTTCCGTCGCACCGGGAAACTTGGAAACTCTGAAAACAAGACTGAAAAGCTATAACAGAAGACTTAACGAAGAAGGTATCACGTTCTTTGAGAGACAATATATTGAAAAGCGCAAAAAAGAAATGGAAAAAGAACTTAAAGAGTTTGAGAGGCAAATAAATGATGTCAAAAGGTTGATAGAAAATAAAAGTGGAGGTTGTTATCCTGCGTCGGCCACCTTTGTAGATGTTGCTGGTAGAAGGCGGCAAATGGAGTCCTTGCTACTTGGGGAAGAAGTACAGGTCATCACCAACAAAGGTGTCACATCAAAGCCAGTCATCACCTTCATCCACCGTCAACCAGACCTTTTTCAAAAATTTCTGCAAATCACGACCTTGCGGTACAAGAAGATCTTGAAGATCACTCAGGACCATTTGATTTTTGTGGAAAAAAATGGCAAAGAAGCCGCCATTCCTGCCAGGGACGTCAAGATTGGAGACATGGTTTACGTAAAGGTCGGAGGCCAAGAAATGTTAGAGAAAGATGCGGTTCAGTGTGTTAGTATTGTTTTCGAGAAAGGTGTGTACGCCCCGGTGACCCTCAGTGGCACCATTCTAGTCAACGATGTCTACACCTCCTGCTACTTTGATGTGTTGTCTCATGTTTGGTTTCATAGAGCTATGGGAGCTGCGCGCGCAGTGTATCATTTATCTCCTAAGATGGCGGAATGGATCAGCAGTATCGGCGAAGAGGATGGATTCCCAGGATGGTGTCGACTGGGGCATAAACTTTTGCTTACTTGGAATGATTTATCTTAA

Transcript

chr7Alt.g16253.t1

TGGCCGAGAGGCGTGTTTGCATGAGAGTATGTAAACACGGTTGTGTGACGTAAAGTTGTACACAGGCCACATCGAAAGAGAGTTTAAATTTTGATTGGTCAGAGTTTTGATTGTGAAAATGAACATACCTGCCCATGCTTCACCAAATTTGCGCATTGGTCGGTCATATGATGCCCAGACTTCAAAGGCTGGTATTGATATTTATCCTGGAAAAATCGAGATTGAAGAGACCAATGTCAACCAGTTCAACTTTGAATACAGAGTCTTAAAAAAAAGCAAAGATACCAAGGACATGCTAAACATATCTGGTGCGCTTTCTCTGAAAGTTAAAGCTGGCCTTGTACCAGTGTCAGGCTCAGGAAAGTATCTTCGTGACAACAAGAAGACCGAGGACACGACAGAGGTGCTTGTCGTATTGAAATGCTTAACGGTTTCTGAGACAATGAGAGGTTTACCGAAGTTGGCGGATGACGTGGCTGGTGGTAAAATCAAACATGGTCTGGGGACACATTACGCGAGAAGTATTACTTATGGCGGAGAATTGGCTGCAAGTCTGTCAATTAAAAACACATCCTCGTCGAAAACACTGGATATACAAGGGCGTGCTTCAGGTGCAGTAAATACTATAGAAGTTGATGTGAGTTTGGATGCCCAATTAAAGAAACTCACAAAGGAATGCTCAGCTTTGTCAGACATATCCATCAAGTATTACTCCACAGATTTGCCATCCAAAGCTCCCACAAATCTGAACGAACTTGTGGAACTGATTAAGGGCTTTCCTTCGAGGTTGGAGAAAATCAACAAAGGCAAGGGGATTCCCCTGGAGTTTGAACTACAACCGATAACTACCGCCCTCCAAATAGAGGGGCCATCCATTTCATATTTACTTCCTCTCAAGGAGGATCAACTGGAACAGTACTATGATGATCTTCGCGCAGCTCAAACTCGACTTAACCTGTACCAGGAAAGCAACGTGGACGAAGACGATGAAGTGTCGAGCTTTAGCGACGGAATCGAGGAAGTCATAGAAAAATTCATGCAAGCTATCAACTCGATAGGATCAAGTGGAGGCTTGGATGAAATGATTAAATCCTGTTTTGACGCTTACCACAAAGCTTTAGGTGGAGGCAAAAGAGCTGGGAAATTCTGTAGAAAATGGGAACAGATTATATCAAAGAAGAAGCCGATTCCACCAATGACAAATATAACGCTCCCTAGGGGAGATCCTCTGACAGTTGTTCTTATCGGAAACACGGGGAATGGAAAGAGTTCTACTGGGAATCAAATACTTGGCCAGAAGCTCTTTGGAGTCAGCGACGGTGTCAAGTCTGACACAGATTCATGTACCCAACAAACTAGAACGAAAGAGAGGAAAATAACAGTGATTGATACTCCTGGCGTTATTGATACAAAAATTGTCAAACAGATGACGAGTATGTGGAGCCAGGCGCAGTACAAAGCTGGATTTAAGAAGGAACTAGAGTCAAGTTTAAAAGAATTGGCAAGATTGTTCCTTTTAGCTCCTGGTGGTTTCAATGCAATCCTTCTCCTTGTGAAGTTTGGCTCTCGATTCACCCGAGACGATAATGACGCATTGCAAATGCTGTTGAAATTCTTTACACCAGACGCCAAGAAATACATGATACTGGTATTGAGCCACGGAGATCAAGCTGAATATAATGCAAGCGAGGAAGGCATCGCCGTTGACGAATACTTGAAAAATTGGATAGGCAAAATGGATGATTGGCTGAAAACGTTTATTCATGATGATCTAAAGGACCGAGTGGTTTTGTTCAACTGCAGGTTGAAGCCAGATAAAGAACCCGAGGCTTACATGAAACAGCTATGCAAATTAATCGAGATGATAGACGAAATTAATAAAGAACAGAAAGTTCCTTTCAAAACAAAATTTACAGACGACAGGGTGACGGACGCGGCGGGTTCCGTCGCACCGGGAAACTTGGAAACTCTGAAAACAAGACTGAAAAGCTATAACAGAAGACTTAACGAAGAAGGTATCACGTTCTTTGAGAGACAATATATTGAAAAGCGCAAAAAAGAAATGGAAAAAGAACTTAAAGAGTTTGAGAGGCAAATAAATGATGTCAAAAGGTTGATAGAAAATAAAAGTGGAGGTTGTTATCCTGCGTCGGCCACCTTTGTAGATGTTGCTGGTAGAAGGCGGCAAATGGAGTCCTTGCTACTTGGGGAAGAAGTACAGGTCATCACCAACAAAGGTGTCACATCAAAGCCAGTCATCACCTTCATCCACCGTCAACCAGACCTTTTTCAAAAATTTCTGCAAATCACGACCTTGCGGTACAAGAAGATCTTGAAGATCACTCAGGACCATTTGATTTTTGTGGAAAAAAATGGCAAAGAAGCCGCCATTCCTGCCAGGGACGTCAAGATTGGAGACATGGTTTACGTAAAGGTCGGAGGCCAAGAAATGTTAGAGAAAGATGCGGTTCAGTGTGTTAGTATTGTTTTCGAGAAAGGTGTGTACGCCCCGGTGACCCTCAGTGGCACCATTCTAGTCAACGATGTCTACACCTCCTGCTACTTTGATGTGTTGTCTCATGTTTGGTTTCATAGAGCTATGGGAGCTGCGCGCGCAGTGTATCATTTATCTCCTAAGATGGCGGAATGGATCAGCAGTATCGGCGAAGAGGATGGATTCCCAGGATGGTGTCGACTGGGGCATAAACTTTTGCTTACTTGGAATGATTTATCTTAATCCGTTCCAATGTTTGCGCACCCAAAAATGTGAGACAATGTCATATTCTGGGCTGTGAAGTAGCTGCCACATGAGTTATGTTGTTTTCCAGCCAGAAATACCAGAAAAATTTGTTTGCCTTTTTCTTACGCCAGAATTTATCATGACTCTCTCCTGAGACCACGTGACATTTTTAGCTCATTATTGAAATAGCTGAAGTTTTATTCAAGAGATTCGAACGAAATATTCGCGTGCTTAAGTTTTAGCTCCGAGTTTTAAAATTGTTTTAACGTCAATAGTATTCTTTTTTTGCGGCTTTGTCGTCGACTCAGCCGTCGTTTTCTTCTAGTCCCTAATACAGTCAGTGCAAAACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99JY3	GTPase IMAP family member 4 OS=Mus musculus OX=10090 GN=Gimap4 PE=1 SV=2
Q9C8V2	Immune-associated nucleotide-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=IAN7 PE=2 SV=1
F4HT21	Immune-associated nucleotide-binding protein 9 OS=Arabidopsis thaliana OX=3702 GN=IAN9 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01079 all species →	Hint	Hint module	Family	Interproscan
PF04548 all species →	AIG1	AIG1 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036844 all species →	Homologous_superfamily	Hint domain superfamily	Interproscan
IPR045058 all species →	Family	GTPase GIMA/IAN/Toc	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003587 all species →	Domain	Hint domain N-terminal	Interproscan
IPR001767 all species →	Domain	Hedgehog protein, Hint domain	Interproscan
IPR006703 all species →	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR001657 all species →	Family	Hedgehog protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10903 all species →	GTPASE, IMAP FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016540 all species →	Biological Process	protein autoprocessing	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0007267 all species →	Biological Process	cell-cell signaling	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g16253.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.