Gene detail

Detailed information of g16285.t1 in Montipora capitata

Genomic Location: Sc0000674:23823...43165
NR annotation: XP_029199182.2, brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16285.t1

atgaacaaggggataaatgacagcagagatttacctcgggaatatcttgagtccatatacgacgagatctcacagaatgaaattaaaatgagaagtgcaccaaagaatgcaaacagatacagcaccatgtaccttcagaatgaaaagcaaaggagacttctgtattaccaagaaatggaacagatggctcagacagcaaaaaccctgattgaaggagtcagtcaaattcaaaccacatttacctctgcgacacacgtggaacacatcagacccatgttcaaggtaacttggagtccgttcttggctgcctttagcgtgaatttacaacactgtgatgacccgcaagttgcatccctgtgcttggatggcattcgctgtgcaatcagaatcggttgcatcttcggaatgcagcttgaacgtgacagtttcgtgcaagctctttcgcgattcactcttctgacagccacagccggacttcatgaaatcaaaactaagaacatcgacacgataaagacactcataactgttgcacagaccgatgggaactacctcggaagggcgtggcatgagattctcaagtgtatatctcagctagagctagctcagctcattggtactggagtgaagactatggggcccacaggaggggcggggctaggttcatctacccccgtgtctatcagtacggccggactagcatcctcacaagctcacgaactggttaacgatcccaagaaaattgcttacattcaagaaacagttggagagacaagttcgcaaagtgttgtggtagctgtagacagaatatttacgggatccactaaacttgatggagattcaattgtggatttcgtgcaagctttaggcgccatttcatctgatgaacttgcaaacccaactcatccgcggatgttcagtttacagaaaatagttgaaatatcttactacaacatgaaccggatccgattggaatggagtagaatatgggctgtgctgggagatcacttcaacaagtgtggttgtaatccaaatgaagatgtggcgtttttctgcgtggactccttgcgccaactcgccatgaagtttttggagaagggagagttgcccaactttcgctttcaaaaggattttcttagaccatttgaatatattgtcaagaaaaataggtctgctacgattcgtgatatggtagtccgctgcgttgcccaaatggttcactcgcaggctcacaatatcaagtcaggttggaagaatgttttctcggtgtttcatttagcggcctctgatgaagatgaggggatagtggagcttgcttttcaaactacagccaccatattcgagaagttcttccacgccaccatcgactcattccaagatgctgtgaaatgtctgtcggagtttgcctgcaacgcgtcatttccagacaccagcatggaggccattagactgatcagaaactgtgctaaatatgtttacgaaaacccagagatgttcagagaacacagtagcgaggatggctgcattccagaagccgataaggtctgggtcaaaggctggttcccagttctctttgaactctcttgtattataaacagatgtaaactggacgtccgaaccaggggtttaacggtgatgtttgagataatgaagagttacggacatacattccaacaacactggtggagggacgtgttcagagttgtgtttaggatttttgacaacatgaagctgcccgatcaacaagtggactggtccgagaagtcagagtggatgacaaccacatgtaaccacgccctatacgccgttgtcgacgtgttcacacagtattttgaagttctgtctgatgtgcttctggaggacatgttttcacatttgttgtggtgtgtccaacaagataacgagcagcttgcgaggtctggtaccaactgcctggaaaacctagtggtttctaatggatcccagttctcccctgaaatgtggcagagggcgtgtcggtgcatcaaagacatattcacttccactgtaccaagcgagctactgacgtggaaaccagacgttcaaagctcagggacacccactcctcaatcgacacccacgcacacccctgatagtcctgtgcgaagtccagagcgtcagccttccttcgacagtaaatctgtagacatagacgtcagaccagaacacgacattgtccctcgtctagaagaagaagatgccgatgaatgggcaactgaagcttacatcagagaacagaagaaaaccgaaaccgctgaagatgctctagaggttcaagaaaaagaacctcccaatcggaacatattaccatcgacagttagaccagatccgacagaaggcttaccccaccactatgacacgccggaggagttatttacgtcgttgttgattcgctgtgttgtccaactggagctcattcagacgattgataacgtggtgttctttcctgctacgagtaggcgtgaagatgccgaaaatctggcctctgctaagtctggagagttgtctacagcccgcttggacagttcattaaacgagagtaccctttccactggaatgtacccgtttctcagttcctctcagttgcttttgtttgtcgactgtttggaggagtcgcacaagttcgccaagtctttcaacgccaacaacgagcagagaacgtttctgatgaaagctggttttaagggaaagtccaagccaaacttgttaaaacaagagacctcgagtttggcctgcatgctgcgtattttgtttaaaatgtattcagacgaagaaaggaaggaatcgtggccggatattgagcaacgatctttgagaatatgcacagatgcattgagttatttcctttcgctggaatcctccagtcaccgtgatgcttggacgtctcttctattgcttctcctgaacagactcctaaagcttgatgaggacaggttcaagacccatatatcccactattaccatgctctgtgtaacatgttactggtggattataaactggaacttcggtcagttctcagacgagtgtttcaaagagtaggatcaacattctctatctgcgccaccaaccccgagtccagctga

Transcript

g16285.t1

ATGAACAAGGGGATAAATGACAGCAGAGATTTACCTCGGGAATATCTTGAGTCCATATACGACGAGATCTCACAGAATGAAATTAAAATGAGAAGTGCACCAAAGAATGCAAACAGATACAGCACCATGTaCCTTCAGAATGAAAAGCAAAGGAGACTTCTGTATTACCAAGAAATGGAACAGATGGCTCAGACAGCAAAAACCCTGATTGAAGGAGTCAGTCAAATTCAAACCACATTTACCTCTGCGACACACGTGGAACACATCAGACCCATGTTCAAGGTAACTTGGAGTCCGTTCTTGGCTGCCTTTAGCGTGAATTTACAACACTGTGATGACCCGCAAGTTGCATCCCTGTGCTTGGATGGCATTCGCTGTGCAATCAGAATCGGTTGCATCTTCGGAATGCAGCTTGAACGTGACAGTTTCGTGCAAGCTCTTTCGCGATTCACTCTTCTGACAGCCACAGCCGGACTTCATGAAATCAAAACTAAGAACATCGACACGATAAAGACACTCATAACTGTTGCACAGACCGATGGGAACTACCTCGGAAGGGCGTGGCATGAGATTCTCAAGTGTATATCTCAGCTAGAGCTAGCTCAGCTCATTGGTACTGGAGTGAAGACTATGGGGCCCACAGGAGGGGCGGGGCTAGGTTCATCTACCCCCGTGTCTATCAGTACGGCCGGACTAGCATCCTCACAAGCTCACGAACTGGTTAACGATCCCAAGAAAATTGCTTACATTCAAGAAACAGTTGGAGAGACAAGTTCGCAAAGTGTTGTGGTAGCTGTAGACAGaATATTTACGGGATCCACTAAACTTGATGGAGATTCAATTGTGGATTTCGTGCAAGCTTTAGGCGCCATTTCATCTGATGAACTTGCAAACCCAACTCATCCGCGGATGTTCAGTTTACAGAAAATAGTTGAAATATCTTACTACAACATGAACCGGATCCGATTGGAATGGAGTAGAATATGGGCTGTGCTGGGAGATCACTTCAACAAGTGTGGTTGTAATCCAAATGAAGATGTGGCGTTTTTCTGCGTGGACTCCTTGCGCCAACTCGCCATGAAGTTTTTGGAGAAGGGAGAGTTGCCCAACTTTCGCTTTCAAAAGGATTTTCTTAGACCATTTGAATATATTGTCAAGAAAAATAGGTCTGCTACGATTCGTGATATGGTAGTCCGCTGCGTTGCCCAAATGGTTCACTCGCAGGCTCACAATATCAAGTCAGGTTGGAAGAATGTTTTCTCGGTGTTTCATTTAGCGGCCTCTGATGAAGATGAGGGGATAGTGGAGCTTGCTTTTCAAACTACAGCCACCATATTCGAGAAGTTCTTCCACGCCACCATCGACTCATTCCAAGATGCTGTGAAATGTCTGTCGGAGTTTGCCTGCAACGCGTCATTTCCAGACACCAGCATGGAGGCCATTAGACTGATCAGAAACTGTGCTAAATATGTTTACGAAAACCCAGAGATGTTCAGAGAACACAGTAGCGAGGATGGCTGCATTCCAGAAGCCGATAAGGTCTGGGTCAAAGGCTGGTTCCCAGTTCTCTTTGAACTCTCTTGTATTATAAACAGATGTAAACTGGACGTCCGAACCAGGGGTTTAACGGTGATGTTTGAGATAATGAAGAGTTACGGACATACATTCCAACAACACTGGTGGAGGGACGTGTTCAGAGTTGTGTTTAGGATTTTTGACAACATGAAGCTGCCCGATCAACAAGTGGACTGGTCCGAGAAGTCAGAGTGGATGACAACCACATGTAACCACGCCCTATACGCCGTTGTCGACGTGTTCACACAGTATTTTGAAGTTCTGTCTGATGTGCTTCTGGAGGACATGTTTTCACATTTGTTGTGGTGTGTCCAACAAGATAACGAGCAGCTTGCGAGGTCTGGTACCAACTGCCTGGAAAACCTAGTGGTTTCTAATGGATCCCAGTTCTCCCCTGAAATGTGGCAGAGGGCGTGTCGGTGCATCAAAGACATATTCACTTCCACTGTACCAAGCGAGCTACTGACGTGGAAACCAGACGTTCAAAGCTCAGGGACACCCACTCCTCAATCGACACCCACGCACACCCCTGATAGTCCTGTGCGAAGTCCAGAGCGTCAGCCTTCCTTCGACAGTAAATCTGTAGACATAGACGTCAGACCAGAACACGACATTGTCCCTCGTCTAGAAGAAGAAGATGCCGATGAATGGGCAACTGAAGCTTACATCAGAGAACAGAAGAAAACCGAAACCGCTGAAGATGCTCTAGAGGTTCAAGAAAAAGAACCTCCCAATCGGAACATATTACCATCGACAGTTAGACCAGATCCGACAGAAGGCTTACCCCACCACTATGACACGCCGGAGGAGTTATTTACGTCGTTGTTGATTCGCTGTGTTGTCCAACTGGAGCTCATTCAGACGATTGATAACGTGGTGTTCTTTCCTGCTACGAGTAGGCGTGAAGATGCCGAAAATCTGGCCTCTGCTAAGTCTGGAGAGTTGTCTACAGCCCGCTTGGACAGTTCATTAAACGAGAGTACCCTTTCCACTGGAATGTACCCGTTTCTCAGTTCCTCTCAGTTGCTTTTGTTTGTCGACTGTTTGGAGGAGTCGCACAAGTTCGCCAAGTCTTTCAACGCCAACAACGAGCAGAGAACGTTTCTGATGAAAGCTGGTTTTAAGGGAAAGTCCAAGCCAAACTTGTTAAAACAAGAGACCTCGAGTTTGGCCTGCATGCTGCgtattttgtttaaaatgtaTTCAGACGAAGAAAGGAAGGAATCGTGGCCGGATATTGAGCAACGATCTTTGAGAATATGCACAGATGCATTGAGTTATTTCCTTTCGCTGGAATCCTCCAGTCACCGTGATGCTTGGACGTCTCTTCTATTGCTTCTCCTGAACAGACTCCTAAAGCTTGATGAGGACAGGTTCAAGACCCATATATCCCACTATTACCATGCTCTGTGTAACATGTTACTGGTGGATTATAAACTGGAACTTCGGTCAGTTCTCAGACGAGTGTTTCAAAGAGTAGGATCAACATTCTCTATCTGCGCCACCAACCCCGAGTCCAGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O46382	Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Bos taurus OX=9913 GN=ARFGEF1 PE=1 SV=1
Q9Y6D6	Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Homo sapiens OX=9606 GN=ARFGEF1 PE=1 SV=2
D4A631	Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Rattus norvegicus OX=10116 GN=Arfgef1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002842 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20252 all species →	BIG2_C	BIG2 C-terminal domain	Domain	Interproscan
PF09324 all species →	Sec7-like_HDS	Mon2/Sec7/BIG1-like, HDS	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR046455 all species →	Domain	Sec7/BIG1-like, C-terminal domain	Interproscan
IPR015403 all species →	Domain	Mon2/Sec7/BIG1-like, HDS	Interproscan
IPR023394 all species →	Homologous_superfamily	Sec7, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10663 all species →	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g16285.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18442	ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.