Gene detail

Detailed information of g16299.t1 in Montipora capitata

Genomic Location: Sc0000675:156462...178109
NR annotation: XP_029193645.2, PAX3- and PAX7-binding protein 1-like [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16299.t1

atgttcaagaagcattcgagacgaaattttcgcaagaaaatcgtggatgaggacgacgaaaatgaaaacgatggtgagtccgagaatgtccctgcaaatgcagaaagtgtttttgacaatttaaaaccatcgcatttggaaaaatccaacaataaaggcgttgctgtcacctcttcgaatccgcttctgagtttttcaatcgacgatgaaatttccaagccgaaggaaaaggccaagtcaaagatcaagggggtcacttcgtcaaactcactgctaagcttcgacgatgaaatcgaagatgagagtgaagtttttaaggttaaaaaatcgaaggaaagccgtcgcctggcaaagaaaattgagctggaacgtaagaagaaagataaaatcgacgataagaaaattgatgaaaatgtaaaccacgatcagagacaagatgatactgacgaaaaactcgctgcactgcgagctgaactgagccagatggcagctgatgacgatgatgaggtagaggaaaaagatgacacagattctgtaggttcaggatccattaaaaaagaacaaattacaaattcaaacgttaaaacagtaatttcagatatcagtataccagatgctgcaaccattcatgctgctcgtaagaggcgtgaaatggcaagacaaactgaacaagagttcatacctttagatgatacaaagagatatgaaagtcagtttgctaccaaaggccggctggtgagagaggatgaaaatgacatcagtgacgaagaggatgaggaaggggtaattagattttctgtagcaaggaaacgaggagcttttcctgctttggacaggcgacgagaaatggaggcagctctttcgaaccaagaattagaggaaaagtcagacaatgaagaggcagaggatgaggagttaaaactttgggaagatgaacaaattcgaaaaggggtgaaaggagttgccgtacccattttgcagtctgaaggtttgcaggctacagatgtcacaaatactctatatcaacaaggatataccgaagacactccctctgccttgcattttcaacaagagcagccatatttgtatggaatggggtattctgagctccaggctaatggcaatcaaatgtatgggcctgccatgacatataattcagtccaagctcgtcatgcagtaacagtggatatgatatctgataagatgaaacaacagcttgcttctctaaaagaagtacaccgtgggcatgaaatggagatggaaaaagctacgtctcagttggaaactgcccaagggaatataaaaaagttagagcgtcaaggacgaaatgctgagcagagattcagcttctttcaagagatgaaggggtatgttagggacttgattgaatgccttaataacaaggttccagaaattgatgagcttgagaggtcaatgcatgcattattgaagaatagagccactaacttagtacagagaaggcagctggatgtcaaggatcaggcacaagactacttaaatgctcaaactggaaagcaaggacagaattctgtgaaaccagctgatcaggccaagttgagacgggtggctgagcgtgagggaagaagggcaaggcgaagaaaacacagagaaaaagagaagaaaggcacacaaaccgaaactcatcatgaaggacagtcaacagacgacgaggaaactgaaacagattctattaaattcagagctgaaactaagaaaattctgtcagaagagaaagcaatatttgaagatgtcgtggaagacttcagttctatcgactcaattaagtcaagattcgaagagtggaagaacaaacatgaagactgttataggaatgcttacatttctctttgtcttcctaaactgtttgctccatttattagactgcaactattggactggaatccatttgaggccaagtgcttagagattgaagaatttcgttggtataaaagtcttgtgctgtttggctgtggggatgacccttatgacattgatgttgatgatcctgatgtaaaacttattccaagcttgctggagaaatcagttattccaaagctaacaggtttttttgagcatgtgtgggaccctctctcgacaaaacaaacaacatttgccataaagttaattagaggaatggctgaagtttacccaaattttcatgctcaggacaaaacaacacagtcactgtttgctgccataacatctcgcctgagaaggtgtgtcagtgatgacgtctatgttcctctctacccaaagagcttacttgacaataaatcgtgtggtgctttgccgttctttcaaagacaattctggagctgtgtgaagctcatgggcaacattctcctatgggaaggtcttctctcatcaggtcgactgcaagaaatggcaattgatggcctcctcaatagataccttctcttagctctgcaacactcgcatctttattatgacagtttggaaaagacgaaagcaattgttggcactttacccaagcagtggttcagtgaacagcaacagaaaacggtgccatccttggaagccttggcaagatacctcgcgacattagctggcagtatgcaacgttcttctgcaggatgccctgaggccgagagaaagaaagcaagaaacggtatcaagaaagttatccagcttttagtacagctgcggtctgtggacaaagcaagacttgtggcaaaggaacacaacatggaggaacaagttaaagacatttaa

Transcript

g16299.t1

ATGTTCAAGAAGCATTCGAGACGAAATTTTCGCAAGAAAATCGTGGATGAGGACGACGAAAATGAAAACGATGGTGAGTCCGAGAATGTCCCTGCAAATGCAGAAAGTGTTTTTGACAATTTAAAACCATCGCATTTGGAAAAATCCAACAATAAAGGCGTTGCTGTCACCTCTTCGAATCCGCTTCTGAGTTTTTCAATCGACGATGAAATTTCCAAGCCGAAGGAAAAGGCCAAGTCAAAGATCAAGGGGGTCACTTCGTCAAACTCACTGCTAAGCTTCGACGATGAAATCGAAGATGAGAGTGAAGTTTTTAAGGTTAAAAAATCGAAGGAAAGCCGTCGCCTGGCAAAGAAAATTGAGCTGGAACGTAAGAAGAAAGATAAAATCGACGATAAGAAAATTGATGAAAATGTAAACCACGATCAGAGACAAGATGATACTGACGAAAAACTCGCTGCACTGCGAGCTGAACTGAGCCAGATGGCagctgatgacgatgatgaggTAGAGGAAAAAGATGACACAGATTCTGTAGGTTCAGGATccattaaaaaagaacaaattaCAAATTCAAACGTTAAAACAGTAATTTCAGATATCAGTATACCAGATGCTGCAACCATTCATGCTGCTCGTAAGAGGCGTGAAATGGCAAGACAAACTGAACAAGAGTTCATACCTTTAGATGATACAAAGAGATATGAAAGTCAGTTTGCTACCAAAGGCCGGCTGGTGAGAGAGGATGAAAATGACATCAGTGACGAAGAGGATGAGGAAGGGGTAATTAGATTTTCTGTAGCAAGGAAACGAGGAGCTTTTCCTGCTTTGGACAGGCGACGAGAAATGGAGGCAGCTCTTTCGAACCAAGAATTAGAGGAAAAGTCAGACAATGAAGAGGCAGAGGATGAGGAGTTAAAACTTTGGGAAGATGAACAAATTCGAAAAGGGGTGAAAGGAGTTGCCGTACCCATTTTGCAGTCTGAAGGTTTGCAGGCTACAGATGTCACAAATACTCTATATCAACAAGGATATACCGAAGACACTCCCTCTGCCTTGCATTTTCAACAAGAGCAGCCATATTTGTATGGAATGGGGTATTCTGAGCTCCAGGCTAATGGCAATCAAATGTATGGGCCTGCCATGACATATAATTCAGTCCAAGCTCGTCATGCAGTAACAGTGGATATGATATCTGATAAGATGAAACAACAGCTTGCTTCTCTAAAAGAAGTACACCGTGGGCATGAAATGGAGATGGAAAAAGCTACGTCTCAGTTGGAAACTGCCCAAGGGAATATAAAAAAGTTAGAGCGTCAAGGACGAAATGCTGAGCAGAGATTCAGCTTCTTTCAAGAGATGAAGGGGTATGTTAGGGACTTGATTGAATGCCTTAATAACAAGGTTCCAGAAATTGATGAGCTTGAGAGGTCAATGCATGCATTATTGAAGAATAGAGCCACTAACTTAGTACAGAGAAGGCAGCTGGATGTCAAGGATCAGGCACAAGACTACTTAAATGCTCAAACTGGAAAGCAAGGACAGAATTCTGTGAAACCAGCTGATCAGGCCAAGTTGAGACGGGTGGCTGAGCGTGAGGGAAGAAGGGCAAGGCGAAGAAAACAcagagaaaaagagaagaaaggcacACAAACCGAAACTCATCATGAAGGACAGTCAACAGACGACGAGGAAACTGAAACAGATTCTATTAAATTCAGAGCTGAAACTAAGAAAATTCTGTCAGAAGAGAAAGCAATATTTGAAGATGTCGTGGAAGACTTCAGTTCTATCGACTCAATTAAGTCAAGATTCGAAGAGTGGAAGAACAAACATGAAGACTGTTATAGGAATGCTTACATTTCTCTTTGTCTTCCTAAACTGTTTGCTCCATTTATTAGACTGCAACTATTGGACTGGAATCCATTTGAGGCCAAGTGCTTAGAGATTGAAGAATTTCGTTGGTATAAAAGTCTTGTGCTGTTTGGCTGTGGGGATGACCCTTATGACATTGATGTTGATGATCCTGATGTAAAACTTATTCCAAGCTTGCTGGAGAAATCAGTTATTCCAAAGCTAACAGGTTTTTTTGAGCATGTGTGGGACCCTCTCTcgacaaaacaaacaacatttgCCATAAAGTTAATTAGAGGAATGGCTGAAGTTTACCCAAATTTTCATGCTCAGGACAAAACAACACAGTCACTGTTTGCTGCCATAACATCTCGCCTGAGAAGGTGTGTCAGTGATGACGTCTATGTTCCTCTCTACCCAAAGAGCTTACTTGACAATAAATCGTGTGGTGCTTTGCCGTTCTTTCAAAGACAATTCTGGAGCTGTGTGAAGCTCATGGGCAACATTCTCCTATGGGAAGGTCTTCTCTCATCAGGTCGACTGCAAGAAATGGCAATTGATGGCCTCCTCAATAGATACCTTCTCTTAGCTCTGCAACACTCGCATCTTTATTATGACAGTTTGGAAAAGACGAAAGCAATTGTTGGCACTTTACCCAAGCAGTGGTTCAGTGAACAGCAACAGAAAACGGTGCCATCCTTGGAAGCCTTGGCAAGATACCTCGCGACATTAGCTGGCAGTATGCAACGTTCTTCTGCAGGATGCCCTGAGGCCGAGAGAAAGAAAGCAAGAAACGGTATCAAGAAAGTTATCCAGCTTTTAGTACAGCTGCGGTCTGTGGACAAAGCAAGACTTGTGGCAAAGGAACACAACATGGAGGAACAAGTTAAAGACATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5B6	PAX3- and PAX7-binding protein 1 OS=Homo sapiens OX=9606 GN=PAXBP1 PE=1 SV=2
P58501	PAX3- and PAX7-binding protein 1 OS=Mus musculus OX=10090 GN=Paxbp1 PE=1 SV=3
P16383	Intron Large complex component GCFC2 OS=Homo sapiens OX=9606 GN=GCFC2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15458 all species →	NTR2	Nineteen complex-related protein 2	Family	Interproscan
PF07842 all species →	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028211 all species →	Family	Pre-mRNA-splicing factor Ntr2	Interproscan
IPR022783 all species →	Domain	GCF, C-terminal	Interproscan
IPR012890 all species →	Family	Intron Large complex component GCFC2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12214 all species →	GC-RICH SEQUENCE DNA-BINDING FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0071008 all species →	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13211	GCFC; GC-rich sequence DNA-binding factor	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.