Gene detail

Detailed information of g16302.t1 in Montipora capitata

Genomic Location: Sc0000676:20110...41792
NR annotation: XP_029197921.2, LOW QUALITY PROTEIN: phospholipase D1-like [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16302.t1

atggaaacatcatcttcttcacaaccagatagtgctaatgcaaaattggaagcagaaatttcagttgagaaacctctgagagaaacaccatcacttaccaaccagaggacctttatagattctagatctggttcagtttgtatctatctagatgaagacgaacatgacatttcagccattggtgtcactactgttccttgtgcttctcaagaaacaaagaaacctgtgtttgttcctggacttaaagtcactgccaagattattgatgttgaacgggcaccaagaacacatccgtttaaccctaacctatacaccatcaaacttactcatggtaacttcaactgggaaatcagacgccgttacaaacacttcataaaacttgatgctgaactgtttctccacagaataaatgtgcctcatcatgttattagaggacgggctggagaaattcggaatttgccaagtagacacttgcccaagcgaccagacatgtttgcaaccactcaaaacatggaaaagagaaaaaaatcccttgagaagtatctgcagattattctagataattctaactatctccatcgcaaggagacactaagtttcctggaagtcagccacttctcctttcagcacgaattgggtgaaaaaggaagggaaggtatactgagaaagcggtctggaggacatcggtttccagctggttgttgtagctgttgttctggtttgtcttggggaatatggaacaagaggtggatcgtggtgaaggacagttttatagcttatgtgagccccagagataaagaagtgagaggagtgctgctaatggacaaagaatttacatttaagcatggaaggaagcaaactggtttgcaaaatggcttgctggttcaaaaccagagcagagaatggatgaaagcaatcattcacatgatggcaaccaaaggtgctgaatggacaaaagatcatcctcactattcatttgctcctgtcaggcaaaatgctgctgctcaatggtatgtggatggagagtcatattttgatggagtagcagatgcattagaagctgcaaacgaagaaatctatttagctggctggtggatcagcccagagctttatcttcgtcgaccaatcactgctggccatgaatggagactggactgtattctcaagagaaaagcagaggaaggggtgaaaattttcattctagtttacaaggaagtagaatttgcactggacattgacagtgcttacactaaagccaaacttatgagcttgcattcaaatatcaaggttttacggcacccggaccacattactggggcaggtgtgatgcgatgggctcatcatgaaaagttggttgttattgaccaaaaggttgcttttatcggaggacttgatctgtgttttggtcgctgggataacagctttcatgctctgactgactttggatccgttgtccctcctccggatataaacaacacggaaaaggagataaggaaaatcggcgccatgattgttgagggatccataaacggactgaaactacccacgtcttcagacttgatggattgtcttgaaattgaacctggtgcaagaggaggaagtaagatgtggctgggaaaagattatgcaaatccaatcaacaaagacttttgtgaactgcgcaaaccttatgaagattctgtagaccgagggacggttcctcgcatgccgtggcatgatgttggaatgtgtgtgtttgatgcatctgcgagagatgtggcccgacacttcatccttaggtggaatgcgacgaagtgtggaaaggttaaaatgtatcccgacattcctttcctgcttccaaagtcgtactcagatcttgtcactgacaggtcagcggcttcgaacagcacgagttcagtggattgtcagattcttcgttccttgtgtgagtggtcgggtggtattcctgtggaatgctctatctattcggcttacatcaaagcaataaaggaagctgaacacttcatttatattgagaatcagttttttatttcctctctgttcatcgacaacgtcaagaatgagatttgccaaaaccttttatggaggatactgagagcgcacagagaagaagaaaactttaaagtcatcgtagtcatgccacttttaccagcatttgaaggggagattggaaaagcaactggtcggtcgaccggcgtcattactcattggaattaccgctcaatttgccgtggctcgcagtccttgttggctagactcgaagagcttgtcggtgatacctccaagtacatctccttctatggactgagaacacactctgaaatgtatggcacgcctgtaacggagttagtgtatgttcacagcaagatgatgatcgttgatgataatacagtcattattggatcagccaacatcaacgaccgtagcttgcttggaagtagggattcggaaatagccgccattgtgaaggacagagaatttgtgtcgtccgtaatggatgctaaggagtacaaagccggacgctttgccttcagcttgagatcaaggttattcagagagcacctgggtatgttagactcaacgtctgatgacgacattagggatgttgtatccgacactttctacaaggtgagtcatacggtcaaacaacgagggaccaacttgaagatcatgtgtttaaacggattataa

Transcript

g16302.t1

atggaaacatCATCTTCTTCACAACCAGATAGTGCTAATGCAAAATTGGAAGCAGAAATTTCAGTTGAGAAACCTCTGAGAGAAACACCATCACTTACCAACCAGAGGACCTTTATAGATTCTAGATCTGGTTCAGTTTGTATCTATCTAGATGAAGACGAACATGACATTTCAGCCATTGGTGTCACTACTGTTCCTTGTGCTTctcaagaaacaaagaaacctGTGTTTGTTCCTGGACTTAAAGTCACTGCCAAGATTATTGATGTTGAACGGGCACCAAGAACACATCCGTTTAACCCTAACCTATACACCATCAAACTTACTCATGGTAACTTCAACTGGGAAATCAGACGCCGTTACAAACACTTCATAAAACTTGATGCTGAACTGTTTCTCCACAGAATAAATGTGCCTCATCATGTTATTAGAGGACGGGCTGGAGAAATTCGGAATTTGCCAAGTAGACACTTGCCCAAGCGACCAGACATGTTTGCAACCACTCAAAACatggaaaagagaaaaaaatcccTTGAGAAGTATCTGCAGATTATTCTAGATAATTCTAACTATCTCCATCGCAAGGAGACACTAAGTTTCCTGGAAGTCAGCCACTTCTCCTTTCAGCACGAATTGGGTGAAAAAGGAAGGGAAGGTATACTGAGAAAGCGGTCTGGAGGACATCGGTTTCCAGCTGGTTGTTGTAGCTGTTGTTCTGGTTTGTCTTGGGGAATATGGAACAAGAGGTGGATCGTGGTGAAGGACAGTTTTATAGCTTATGTGAGCCCCAGAGATAAAGAAGTGAGAGGAGTGCTGCTAATGGACAAAGAATTTACATTTAAGCATGGAAGGAagcaaactggtttgcaaaatGGCTTGCTGGTTCAAAACCAGAGCAGAGAATGGATGAAAGCAATCATTCACATGATGGCAACCAAAGGTGCTGAATGGACAAAAGATCATCCTCACTATTCATTTGCTCCTGTCAGGCAAAATGCTGCTGCTCAATGGTATGTGGATGGAGAGTCATATTTTGATGGAGTAGCAGATGCATTAGAAGCTGCAAACGAAGAAATCTATTTAGCTGGCTGGTGGATCAGCCCAGAGCTTTATCTTCGTCGACCAATCACTGCTGGCCATGAATGGAGACTGGACTGTATTCTCAAGAGAAAAGCAGAGGAAGGGGTGAAAATTTTCATTCTAGTTTACAAGGAAGTAGAATTTGCACTGGACATTGACAGTGCTTACACTAAAGCCAAACTTATGAGCTTGCATTCAAATATCAAGGTTTTACGGCACCCGGACCACATTACTGGGGCAGGTGTGATGCGATGGGCTCATCATGAAAAGTTGGTTGTTATTGACCAAAAGGTTGCTTTTATCGGAGGACTTGATCTGTGTTTTGGTCGCTGGGATAACAGCTTTCATGCTCTGACTGACTTTGGATCCGTTGTCCCTCCTCCGGATATAAACAACACGGAAAAGGAGATAAGGAAAATCGGCGCCATGATTGTTGAGGGATCCATAAACGGACTGAAACTACCCACGTCTTCAGACTTGATGGATTGTCTTGAAATTGAACCTGGTGCAAGAGGAGGAAGTAAGATGTGGCTGGGAAAAGATTATGCAAATCCAATCAACAAAGACTTTTGTGAACTGCGCAAACCTTATGAAGATTCTGTAGACCGAGGGACGGTTCCTCGCATGCCGTGGCATGATGTTGGAATGTGTGTGTTTGATGCATCTGCGAGAGATGTGGCCCGACACTTCATCCTTAGGTGGAATGCGACGAAGTGTGGAAAGGTTAAAATGTATCCCGACATTCCTTTCCTGCTTCCAAAGTCGTACTCAGATCTTGTCACTGACAGGTCAGCGGCTTCGAACAGCACGAGTTCAGTGGATTGTCAGATTCTTCGTTCCTTGTGTGAGTGGTCGGGTGGTATTCCTGTGGAATGCTCTATCTATTCGGCTTACATCAAAGCAATAAAGGAAGCTGAACACTTCATTTATATTGAGAATCAGTTTTTTATTTCCTCTCTGTTCATCGACAACGTCAAGAATGAGATTTGCCAAAACCTTTTATGGAGGATACTGAGAGCGCACAGAGAAGAAGAAAACTTTAAAGTCATCGTAGTCATGCCACTTTTACCAGCATTTGAAGGGGAGATTGGAAAAGCAACTGGTCGGTCGACCGGCGTcattactcattggaattaccGCTCAATTTGCCGTGGCTCGCAGTCCTTGTTGGCTAGACTCGAAGAGCTTGTCGGTGATACCTCCAAGTACATCTCCTTCTATGGACTGAGAACACACTCTGAAATGTATGGCACGCCTGTAACGGAGTTAGTGTATGTTCACAGCAAGATGATGATCGTTGATGATAATACAGTCATTATTGGATCAGCCAACATCAACGACCGTAGCTTGCTTGGAAGTAGGGATTCGGAAATAGCCGCCATTGTGAAGGACAGAGAATTTGTGTCGTCCGTAATGGATGCTAAGGAGTACAAAGCCGGACGCTTTGCCTTCAGCTTGAGATCAAGGTTATTCAGAGAGCACCTGGGTATGTTAGACTCAACGTCTGATGACGACATTAGGGATGTTGTATCCGACACTTTCTACAAGGTGAGTCATACGGTCAAACAACGAGGGACCAACTTGAAGATCATGTGTTTAAACGGATTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13393	Phospholipase D1 OS=Homo sapiens OX=9606 GN=PLD1 PE=1 SV=1
O08684	Phospholipase D1 OS=Cricetulus griseus OX=10029 GN=PLD1 PE=2 SV=1
P70496	Phospholipase D1 OS=Rattus norvegicus OX=10116 GN=Pld1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001609 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13091 all species →	PLDc_2	PLD-like domain	Domain	Interproscan
PF00614 all species →	PLDc	Phospholipase D Active site motif	Family	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025202 all species →	Domain	Phospholipase D-like domain	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR015679 all species →	Family	Phospholipase D family	Interproscan
IPR016555 all species →	Family	Phospholipase D, eukaryotic type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18896 all species →	PHOSPHOLIPASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004630 all species →	Molecular Function	phospholipase D activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0060627 all species →	Biological Process	regulation of vesicle-mediated transport	Interproscan
GO:0006654 all species →	Biological Process	phosphatidic acid biosynthetic process	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01115	PLD1_2; phospholipase D1/2	EC:3.1.4.4	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.