Gene detail

Detailed information of g16348.t1 in Acropora digitifera

Genomic Location: chr7Alt:28006079...28010018
NR annotation: XP_044164606.1, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr7Alt.g16348.t1

ATGCTCTCTACTCATGATGGATTCAGCTTACCTTGTAAGGTGGAATAGGAGGGGAGAGAATATTGTTTCCAAGTAAAGAATAACTAGGACGCGTCAAATACGTTTCAATGTTTTGTATTAATTGGCCGAATTATAATCAGAATCAAGTAAAGGTTGTAATGTTCTTCTTGCAAACAGCTACCACAATAATAAAAAGATAACGAAAGCTGTGTTTTCCTATTCCTGTGTTTGTTTACAACACAGAATTTACAGTTTTATACCCATCCGATCTACAAACAAGAGAGCTTTATGTGTGAATCCTGTTTTCAAGCTCACCAACGCTTGAAGGCCACAAGAGATCATCGCAATGTTTTGATCGACAAACTCCAAGCTCAAGATGTACAAGAGTTGATCGAAAGACCCATCATGTGTTCAAAGAAATATCACAAGGATCAGCCACTGGAATTTTATTGTCAGGATTGCAAAGTTCTTATTTGCCAAAAGTGCAGTGTAGTGAGTCATAATCGACACAACATGACAGACACGCAGCAAGCTGCACAAGAACAAAAGATACAAATGGCGGAGGCTGTGGCCAAATTGAAAGCGGAAGTTCTTTTGTATAAGAATGAAATCAAGAAACAAACTGACCTAAAAGACAAAAACGTAACTGATATTCTGAACGCTGAAAAGAAAATGACAGACACGGTAGAAGAATGGATTCGCGATTTGCGAGAACACGAGAAGAAAATGAAGCAGAAGTTTCGTGAGATTTATGAAGTGGAACAAAAACAACACGCAACACGACTGGAAAACTTGGAGCTGATTACTACCCAACTGAAAAGCTGCGTGGAACGAGGCCAGGGTATCATAGAAAGAAACATCAGCGCTGAAATTTTACAAACAAATCATACCATTTTCCAACGCTGCGATGAACTGATAAATGCACGAAAGTTAGATCGCTACAAGTCGCCATATTTGAATTACTTGGTTAAAAAGAAATTTGATATTTTCGATCAAATTCTAATAACCAAGACTGATTCCTCGATGTGCTTAATTGAGGTTAATAACAGCGAGATCGGTAGAGAGTCAAATGTTGTTGCTTTTACAAGGGATTCAGATGGATTGCAATGTTATCAAGAGGATGATGAAATCAAAGTCGACATTTTGACTACAGATGGTGATCACCTGAAAACAGAACTGAAAGACAGCAAGGACGGCAAATACACAGTGACATACACACCACGATGTGTTGGACCTCATAATGTTGAAATCCAAGTGAATGGACAGCCACTCACTGGTAGCCCTTTTGTTGTGCAGGTTCATCATCAGTATCAACGTGCTTTTCATTTTGGTGGACCAGGTCTGATTTGTTTCATTACGGGTATTGCTGTGAGTGACAAAACTGGAGCAATTGCTGTTGCTGGTTCTCACTTGAGGGGATTTAAACTATTCAGTTCAGATCGAAAGTTTCAAAGAGAGGTAAAAGTTGATGGTATTCCTTCTTCCTTAGCATTCACAGGCTGTGGTGACCTACTGATTTTATCTTTAACTTCGGAAAACAATAAGCTTTGTCTGTTTAGTGAGGAAGGTCAGTTCTTAAAACACATTAAGTTGGATAAGCATCTTGAAAAACCACGGCACCTTTCCATTGCGAGTGATGGTCGTTTAATCATAACTGATGAGGCAAGCAATGAAGTGAAGGTCCTTTCCCCTGATGGGAATGACTTGCTAGTGTCCATGACTGCCCCAAACTGTGATAACTCTCCAAAATGTGCTATTTATCATCAGAACAAGTTTTATGTTTCTTATCCTGAAGCTCATTGTATCAAGGTATTTGACAAAACAGGAGTGTACATACATGACATAGGCTGTAAGGGATCCAGTGATGGACAGTTTAATAACCCTGTTGGACTCGTCATTGACAAGTACAACCAACTAATAGTGTGTGATGCAAATAACCTAAGGCTGCAAATCTTTACCCTCAGGGGCAAGTTTTTGAGCAAATGCCTCAACTTGACGAGAGGTCCAACCTTTTCTGCTTCAAATATAAATAATGGTAATTTATTTGTAACTTCTCTTCTTGGAGAAAGCATTTCTGTTTTACATTGAAGGTGTTTGATAATATGATGAAAGAAGCTAATTCTTGTCAACTACAATAGAGGCAACAAACCATTTTTTGGGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13263	Transcription intermediary factor 1-beta OS=Homo sapiens OX=9606 GN=TRIM28 PE=1 SV=5
Q62318	Transcription intermediary factor 1-beta OS=Mus musculus OX=10090 GN=Trim28 PE=1 SV=3
O08629	Transcription intermediary factor 1-beta OS=Rattus norvegicus OX=10116 GN=Trim28 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g16348.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.