Gene detail

Detailed information of g1635.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KAJ7379164.1, nucleobase-containing compound biosynthetic process [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q5RBN8	Protein lin-54 homolog OS=Pongo abelii OX=9601 GN=LIN54 PE=2 SV=1
Q641Z1	Protein lin-54 homolog OS=Rattus norvegicus OX=10116 GN=Lin54 PE=1 SV=2
Q6MZP7	Protein lin-54 homolog OS=Homo sapiens OX=9606 GN=LIN54 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03638	TCR	Tesmin/TSO1-like CXC domain, cysteine-rich domain	Domain	Interproscan
PF08338	DUF1731	Domain of unknown function (DUF1731)	Family	Interproscan
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF03747	ADP_ribosyl_GH	ADP-ribosylglycohydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028307	Family	Lin-54 family	Interproscan
IPR005172	Domain	CRC domain	Interproscan
IPR033467	Domain	Tesmin/TSO1-like CXC domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013549	Domain	Domain of unknown function DUF1731	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR039049	Family	Elongin B	Interproscan
IPR036705	Homologous_superfamily	ADP-ribosylation/Crystallin J1 superfamily	Interproscan
IPR005502	Family	ADP-ribosylation/Crystallin J1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12446	TESMIN/TSO1-RELATED	Interproscan
PTHR11092	SUGAR NUCLEOTIDE EPIMERASE RELATED	Interproscan
PTHR13248	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0030891	Cellular Component	VCB complex	Interproscan
GO:0070449	Cellular Component	elongin complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07071	K07071; uncharacterized protein	-	Cellular senescence	ko04218	deepkoala
			DNA repair and recombination proteins	ko03400	deepkoala
			Function unknown	-	deepkoala