Gene detail

Detailed information of g16388.t1 in Acropora digitifera

Genomic Location: chr7Alt:28633637...28639093
NR annotation: XP_029209385.2, ankyrin-1-like isoform X3 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16388.t1

ATGGATGGTTGTGTTGATCGCCAACCAAAAAATGCGCCTGCTGTGTCACTTAAATACGTTTGCTTAAAGCTTGAAGAACAAATCTCCCAGTACTTATGCAGTCACACTGGCAGTAGTCTTGTAAAGGCTTGCATACTTGGCAAGGAGGAAACCATCCTTGAGCTTAAACCAACATTACAAGAAATCAACCATGGCGAGCCAGCTCTTTATGGGATGGCACCTTTGCATATTGCGTGTTTTTTTGATCATCTGGAAGTGGCTCATGCACTTCTTCAGTCTGGGGCAGATACGGAGTTGCGAGTTGAGAAGACTATTGCAAAGGAAACATCACTTCACATTGCCGCTGGGCGTGGTTATGGCCAGATGGTTAGGGTGCTTCTGGAGAAGGGAGCCGATCCAAATAGCATTGCTTCCAATCACTTGAAAACACCTTTGCATGTTGCAGCCAGTGATGGCCATGTCCAGGTTGTAAAATATCTACTGCAAGGAGGTGCAAAGAGAGAGGCTCAACGGCCTGCTGAGCTGAGCAGGTTTGGTTCCTGGTGCACTCCTCTGCATCTTGCCTGTCAGAAAGGACATCTGGAAATTGTCAAAGTCCTTCATCAGCATGGAGCTAACATCGATGCCATATCCGAAGATCACAGAGGCATTTCTGTGTTACACAATGCTGTGATCAAGCACCACGTAGATATCATTAAGTACTTGATCAATCAAGGGGTGACAATGAAGGTTTTTGATAGTGCTGGTTTCAGTCCATTGCACGTTGCTGCCAAACATGGCTGTACAGATATAATGGATTTGTTAATAAAAGGAGGGTCAGAGGTTGATTGTTTCTTCACTGACCCCATGCACACTCCTCTGATGTCTTCAATCACTTCAGAACAATACAATTCAATGAAAACCCTCCTTGAGGCAGGTGCTAAGGTAAATGGGGTGCTGGATGATGCGGCTCCTCTCTATCAAGCCATACGTTACGAGCCCACTAATCTTCCCATGGTAGAGCTCTTAATTTCTTTTGGTGCTAATGAATGTGTTCCTGATGAAATAGGGTACTACCCTTTACACTGTGCAGCATACTGTGGACAGTACGAAATAGCTGAATTCTTTCTACAATGTGGCCACGATCCTGATCAGTTGTCCGAGTGTCCAGATGACATTGGTCAGCATGAGACACCTCTTCACTGTGCAGTCTTTGGTAATAAGCCAAGTATCCTGCAACTTCTTGTTAAGGCAGGTGTCTCAGTTGACTGTTTAGCTCATCCTGGTAGACAGACACCCATATATAATGCTGTATTAAACCAAAAGATCGACATGGTAGAGCAGTTGATCGACCTGAACGCGGATCTTAATGTGAAAGATGCTTCAAGTGTCACGCCACTTCATCATGCAATATCCAGTCAGAATAATGACATTATCAGGTTGTTGATCCAAAAGGGGGCACACCTAGAGAATAAAACTGTAGATGGTCTGACGCCTTTGCACATTGCTGTAATAGATGGGAGTGAAGAATCTGCAAAGTTGTTGATTGATTCAGGGGCATCTGTGAGTGCGACGTCAACATGTGGAGAAACACCGCTGCATTTTGCAGCCGAACTTAATTGTACTCGTAAAGTTGAACTTTTTTTGCAAAATGGTGTTGATGTGAACTCGACTGATTGCAATGGGATATCCCCTCTACATCTCGCGTCAGGGAAAGGACATGATGCTATCGTTGAGCTCTTATGCAAACAAAAGAAAGCCAATGTCGATTTGAAAGATCACAGTGGTGTTACACCACTACACCTTGCTACTTTTAATGGACATGAAACAGCTGTCCGGATTCTTCTTGAAGCAGGGGCCAATCATGAGGAAACATTCAATGGAGAATCGGTTTCCAGCATCTGCTGTCGTCGGGGTTTTGTTGACGTCGTAGGAGAGCTTCAAGCACCTTGTGGGTCCACTTCAGAAGCTACAGACAAAGGGAATCTATCTGATTGTGACACCCTACAGACTTTGCCAAAGTATTTAAAGCGAGTCTTGGAGACTGATGGAATCGGGAAGGTGCCACAGTCAAAGGAGGCACAACTAATTACTGAAGTTGTAACCGTTTTTATTCAAGACCTAATGACAGCTGTTGGAGAACTTGATTCACGTTTCTCTGGCGAAGTTAAATTATCAGGAAGTATTGCTGAATCCTGTAAGGTGGGAGAGCCTGATGAGTTTGACTTTATGTTATATTTGCCAACTTTAGCTGAGAACTTTGTGCCTGTCCATTCTCCAGATGACCCAGCAGCCTACTGTAAAGTTGAATTAAAGAAAGACAGGAACATTGAAAAAGTCAAAGACCTGTTAAAGGATGGAAAATATTTGTTCCCCCAGCGAATTAAAGCGTGTCTTTTCAGCCACATTGAAGATGTGCTTCTGCTCAAGAGAGTCAAGGTACCACAAGAAATACGTTTTTATCTTGAAGAATTTATGCCAGAAAGTGATAAACATAGGATAGTAAGTGAGATTAAACCTGGTTTCATTTTACACTTGGAGTGGAGAAGGGGTTTGTACACAGGTTTGAAAGTTACGGCCGATGTTATCCCAACTTTGCCTTTTGATGATCCTAAGGAAGCTGATATGAACTATACAACCAAGTCTTGGAAACTCCTTTCTGAAGTTAAGGATTGCAGCGACCATTCTGAAAGTGCAGCTATATTGTATCTCGTCCCAAAACCTGTTTCAAGTTCTACCACGAGATTTAACGAAAATGTCTTTTGGCGTATTTCTATGTCCAAATTAGAATCCAAGATCCTTCAAAGAATTCCAGATTACAAGAGAGAGGTATACCTAATGGGAAAGGTACTCCTCCAACAGAGTGGCAAGGTACCAGATGTGGATGGTCTGGGATCTTGTGTGTATTCTATACACACATATCTCCTGAAAACAGGGTTCCTTGTTGAATTGGCCAGAGTTCCACAGAGCGAATCATGGGAGGGCAGAGACCTTGTCGTCAGGTTGTTGGATCTATTTGGTCATCTGAAGCAGAACATTGAATCTGGTGACATGCCGTCTTTCTTCATAGAAGAGTACAATCTCCTTCTTGGTGAGAACAGCAATGCGGAGAGAACAGCTCGTATTTGGATTCTAGATGCAATACTTTCGTTTCTCTCAAGTACAGACGACATGCAGCTTGGACAACGCGATCCCCGTGATCTAGAAACTATATTGCAAAGCCAAAGGCCAGAATGTATCTCTAGTAAGGAAGTTGCAAAGCTGCAAGAACAAGATAAATATGGCCATTTTTCCTCATTCTAA

Transcript

chr7Alt.g16388.t1

AATTTTTTCAAGAATTAATTAATTCACAAAAAATCCACGATCCCAATTCACCGGTGTCCTTTACAATTTTCAATTCCTAGATCCACAATGCATTGTGATCCACACTGACAAAGATGGCGGATCAATGTGTCCTTTGAGAGACGTGTTGTTCTACAAACTTTCCTCCGACTGATAATCGTAATGTCATTATTTCCTTCAAGAGTATGCTCACATTTGGCTGTAGGATTGGAAATATAGTCTCCTTAACATTCTAACTGCTTCAAATGGATGGTTGTGTTGATCGCCAACCAAAAAATGCGCCTGCTGTGTCACTTAAATACGTTTGCTTAAAGCTTGAAGAACAAATCTCCCAGTACTTATGCAGTCACACTGGCAGTAGTCTTGTAAAGGCTTGCATACTTGGCAAGGAGGAAACCATCCTTGAGCTTAAACCAACATTACAAGAAATCAACCATGGCGAGCCAGCTCTTTATGGGATGGCACCTTTGCATATTGCGTGTTTTTTTGATCATCTGGAAGTGGCTCATGCACTTCTTCAGTCTGGGGCAGATACGGAGTTGCGAGTTGAGAAGACTATTGCAAAGGAAACATCACTTCACATTGCCGCTGGGCGTGGTTATGGCCAGATGGTTAGGGTGCTTCTGGAGAAGGGAGCCGATCCAAATAGCATTGCTTCCAATCACTTGAAAACACCTTTGCATGTTGCAGCCAGTGATGGCCATGTCCAGGTTGTAAAATATCTACTGCAAGGAGGTGCAAAGAGAGAGGCTCAACGGCCTGCTGAGCTGAGCAGGTTTGGTTCCTGGTGCACTCCTCTGCATCTTGCCTGTCAGAAAGGACATCTGGAAATTGTCAAAGTCCTTCATCAGCATGGAGCTAACATCGATGCCATATCCGAAGATCACAGAGGCATTTCTGTGTTACACAATGCTGTGATCAAGCACCACGTAGATATCATTAAGTACTTGATCAATCAAGGGGTGACAATGAAGGTTTTTGATAGTGCTGGTTTCAGTCCATTGCACGTTGCTGCCAAACATGGCTGTACAGATATAATGGATTTGTTAATAAAAGGAGGGTCAGAGGTTGATTGTTTCTTCACTGACCCCATGCACACTCCTCTGATGTCTTCAATCACTTCAGAACAATACAATTCAATGAAAACCCTCCTTGAGGCAGGTGCTAAGGTAAATGGGGTGCTGGATGATGCGGCTCCTCTCTATCAAGCCATACGTTACGAGCCCACTAATCTTCCCATGGTAGAGCTCTTAATTTCTTTTGGTGCTAATGAATGTGTTCCTGATGAAATAGGGTACTACCCTTTACACTGTGCAGCATACTGTGGACAGTACGAAATAGCTGAATTCTTTCTACAATGTGGCCACGATCCTGATCAGTTGTCCGAGTGTCCAGATGACATTGGTCAGCATGAGACACCTCTTCACTGTGCAGTCTTTGGTAATAAGCCAAGTATCCTGCAACTTCTTGTTAAGGCAGGTGTCTCAGTTGACTGTTTAGCTCATCCTGGTAGACAGACACCCATATATAATGCTGTATTAAACCAAAAGATCGACATGGTAGAGCAGTTGATCGACCTGAACGCGGATCTTAATGTGAAAGATGCTTCAAGTGTCACGCCACTTCATCATGCAATATCCAGTCAGAATAATGACATTATCAGGTTGTTGATCCAAAAGGGGGCACACCTAGAGAATAAAACTGTAGATGGTCTGACGCCTTTGCACATTGCTGTAATAGATGGGAGTGAAGAATCTGCAAAGTTGTTGATTGATTCAGGGGCATCTGTGAGTGCGACGTCAACATGTGGAGAAACACCGCTGCATTTTGCAGCCGAACTTAATTGTACTCGTAAAGTTGAACTTTTTTTGCAAAATGGTGTTGATGTGAACTCGACTGATTGCAATGGGATATCCCCTCTACATCTCGCGTCAGGGAAAGGACATGATGCTATCGTTGAGCTCTTATGCAAACAAAAGAAAGCCAATGTCGATTTGAAAGATCACAGTGGTGTTACACCACTACACCTTGCTACTTTTAATGGACATGAAACAGCTGTCCGGATTCTTCTTGAAGCAGGGGCCAATCATGAGGAAACATTCAATGGAGAATCGGTTTCCAGCATCTGCTGTCGTCGGGGTTTTGTTGACGTCGTAGGAGAGCTTCAAGCACCTTGTGGGTCCACTTCAGAAGCTACAGACAAAGGGAATCTATCTGATTGTGACACCCTACAGACTTTGCCAAAGTATTTAAAGCGAGTCTTGGAGACTGATGGAATCGGGAAGGTGCCACAGTCAAAGGAGGCACAACTAATTACTGAAGTTGTAACCGTTTTTATTCAAGACCTAATGACAGCTGTTGGAGAACTTGATTCACGTTTCTCTGGCGAAGTTAAATTATCAGGAAGTATTGCTGAATCCTGTAAGGTGGGAGAGCCTGATGAGTTTGACTTTATGTTATATTTGCCAACTTTAGCTGAGAACTTTGTGCCTGTCCATTCTCCAGATGACCCAGCAGCCTACTGTAAAGTTGAATTAAAGAAAGACAGGAACATTGAAAAAGTCAAAGACCTGTTAAAGGATGGAAAATATTTGTTCCCCCAGCGAATTAAAGCGTGTCTTTTCAGCCACATTGAAGATGTGCTTCTGCTCAAGAGAGTCAAGGTACCACAAGAAATACGTTTTTATCTTGAAGAATTTATGCCAGAAAGTGATAAACATAGGATAGTAAGTGAGATTAAACCTGGTTTCATTTTACACTTGGAGTGGAGAAGGGGTTTGTACACAGGTTTGAAAGTTACGGCCGATGTTATCCCAACTTTGCCTTTTGATGATCCTAAGGAAGCTGATATGAACTATACAACCAAGTCTTGGAAACTCCTTTCTGAAGTTAAGGATTGCAGCGACCATTCTGAAAGTGCAGCTATATTGTATCTCGTCCCAAAACCTGTTTCAAGTTCTACCACGAGATTTAACGAAAATGTCTTTTGGCGTATTTCTATGTCCAAATTAGAATCCAAGATCCTTCAAAGAATTCCAGATTACAAGAGAGAGGTATACCTAATGGGAAAGGTACTCCTCCAACAGAGTGGCAAGGTACCAGATGTGGATGGTCTGGGATCTTGTGTGTATTCTATACACACATATCTCCTGAAAACAGGGTTCCTTGTTGAATTGGCCAGAGTTCCACAGAGCGAATCATGGGAGGGCAGAGACCTTGTCGTCAGGTTGTTGGATCTATTTGGTCATCTGAAGCAGAACATTGAATCTGGTGACATGCCGTCTTTCTTCATAGAAGAGTACAATCTCCTTCTTGGTGAGAACAGCAATGCGGAGAGAACAGCTCGTATTTGGATTCTAGATGCAATACTTTCGTTTCTCTCAAGTACAGACGACATGCAGCTTGGACAACGCGATCCCCGTGATCTAGAAACTATATTGCAAAGCCAAAGGCCAGAATGTATCTCTAGTAAGGAAGTTGCAAAGCTGCAAGAACAAGATAAATATGGCCATTTTTCCTCATTCTAAGTATAGCGTGCAGTGAGAAAATCTGATGAGTTCCTCACCTAAGTCATGAAAGGAAGAGACAAAAAAAAAAGGCAGAACTAATATAAAAAAGACAGCAAAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF20266 all species →	Mab-21_C	Mab-21 protein HhH/H2TH-like domain	Domain	Interproscan
PF03281 all species →	Mab-21	Mab-21 protein nucleotidyltransferase domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR046906 all species →	Domain	Mab-21-like, HhH/H2TH-like domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR024810 all species →	Family	MAB21L/Cyclic GMP-AMP synthase-like receptor	Interproscan
IPR046903 all species →	Domain	Mab-21-like, nucleotidyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24126 all species →	ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15502	ANKRD28; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.