Detailed information of g1646.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: APW77288.1, Sox23 [Hydractinia echinata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q20201Transcription factor sox-3 OS=Caenorhabditis elegans OX=6239 GN=sox-3 PE=2 SV=1
Q9XS37Sex-determining region Y protein OS=Bos mutus grunniens OX=30521 GN=SRY PE=3 SV=1
Q67EX7Sex-determining region Y protein OS=Moschus berezovskii OX=68408 GN=SRY PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15313HEXIMHexamethylene bis-acetamide-inducible proteinFamilyInterproscan
PF01092Ribosomal_S6eRibosomal protein S6eFamilyInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF20700MutatorMutator-like transposaseDomainInterproscan
PF02494HYRHYR domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024872FamilyHEXIMInterproscan
IPR001377FamilySmall ribosomal subunit protein eS6Interproscan
IPR050140FamilySRY-related HMG-box transcription factorsInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR049012DomainMutator-like transposase domainInterproscan
IPR003410DomainHYR domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13469HEXAMETHYLENE BISACETAMIDE INDUCIBLE 1Interproscan
PTHR1150240S RIBOSOMAL PROTEIN S6Interproscan
PTHR10270SOX TRANSCRIPTION FACTORInterproscan
PTHR24273FI04643P-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0004861Molecular Functioncyclin-dependent protein serine/threonine kinase inhibitor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0017069Molecular FunctionsnRNA bindingInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0045736Biological Processnegative regulation of cyclin-dependent protein serine/threonine kinase activityInterproscan
GO:0097322Molecular Function7SK snRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15189HEXIM1_2; protein HEXIM1/2-Transcription machineryko03021deepkoala

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