Gene detail

Detailed information of g1654.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047996387.1, uncharacterized protein LOC125234221 [Leguminivora glycinivorella]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q3ZCE0	U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3
O95777	U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3
Q6ZWM4	U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04184	ST7	ST7 protein	Repeat	Interproscan
PF01423	LSM	LSM domain	Domain	Interproscan
PF01179	Cu_amine_oxid	Copper amine oxidase, enzyme domain	Domain	Interproscan
PF13621	Cupin_8	Cupin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR007311	Family	ST7	Interproscan
IPR044642	Family	U6 snRNA-associated Sm-like protein Lsm1/8	Interproscan
IPR047575	Domain	Sm domain	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR034103	Domain	Sm-like protein Lsm8	Interproscan
IPR001163	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR000269	Family	Copper amine oxidase	Interproscan
IPR015798	Domain	Copper amine oxidase, catalytic domain	Interproscan
IPR036460	Homologous_superfamily	Copper amine oxidase, catalytic domain superfamily	Interproscan
IPR049948	Conserved_site	Copper amine oxidase, TPQ-binding site	Interproscan
IPR050835	Family	ATP-binding cassette sub-family D	Interproscan
IPR041667	Domain	Cupin-like domain 8	Interproscan
IPR003347	Domain	JmjC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46704	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR12745	SUPPRESSION OF TUMORIGENICITY 7	Interproscan
PTHR15588	LSM1	Interproscan
PTHR10638	COPPER AMINE OXIDASE	Interproscan
PTHR11384	ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER	Interproscan
PTHR12461	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005688	Cellular Component	U6 snRNP	Interproscan
GO:0016070	Biological Process	RNA metabolic process	Interproscan
GO:0046540	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008131	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308	Biological Process	amine metabolic process	Interproscan
GO:0048038	Molecular Function	quinone binding	Interproscan
GO:0005324	Molecular Function	long-chain fatty acid transmembrane transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005778	Cellular Component	peroxisomal membrane	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0007031	Biological Process	peroxisome organization	Interproscan
GO:0015910	Biological Process	long-chain fatty acid import into peroxisome	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0042760	Biological Process	very long-chain fatty acid catabolic process	Interproscan
GO:0016706	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24927	TTC4, CNS1; tetratricopeptide repeat protein 4	-	Spliceosome	ko03041	deepkoala
K24927	TTC4, CNS1; tetratricopeptide repeat protein 4	-	Chaperones and folding catalysts	ko03110	deepkoala