Gene detail

Detailed information of g1655.t1 in Montipora capitata

Genomic Location: Sc0000022:103009...112934
NR annotation: XP_020609279.1, guanylate-binding protein 7-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g1655.t1

atgacaggtattcgtgcttctaaaaaaggagcatgcgcaataccgctttgtgtaccgaacaactatgtgtggaacccactgacaggaaagattatcaagacagaggccgagcgctcttcgctagaagtggtcgatgaagcacttgagaaacttagggagataaaaggtcctgtgtgcgtggtatctattgctggtccgtacagaaagggcaagtcgtatatcttaagcgaagcttttgaccaaccagacgttttccctcttggacaccaaatggtgcccgagaccatgggcatatggttatggattgtacctggaaaatataaggattgcaatggacaggaattcacagtagtgctcctggactctgaaggaatcgattctacaactagtgaaagttttgacgaccatcagattttcacgttaaccgttctgttagcttctgtcttaatctacaattcccaaggtgttccgacaagaaatgacgtagagaaactggactttatagtaaagctctctaaaagaatccaggtaagatccactgtctctggtccgtctcagagtcgtctggctgaagacaaagaattctttcacaagacatttcctcaattcgtttggctcttgagagatgtaacacaagacattccagaagactgcaaagatgttaaggagtacttcttaaaaaaggttttcaaagatcatccgggccaacaagtatctgaaagtatcttacgcttatttgctggttttgaagcgttttctttgcctcctcccacaactgataaggaaacgatgaaaagcctaaaccagaaaaaaagtctcgctgccttggttgtgctttacgttgaagcgattaacacccctgatgctattcctaatgtgcagaaggcctgggacacattcgtcttagcgaaatgtttggacgtgaaacaggctgccttgcagacgtatgatgcactcatgacgtcacagttatccgatgtactgccatgtagcaatactgagataagaacaagccatgacgctgctctgaaagagtgtgaatctcagtttataatggaattatctggaatatctacaaactcaattgaaatggcttcgagagagcttaaggaatctgtagacaagaagttaacctcgtggctgaccgacaatgaagtgaaaaccagacgattttgtaaagatctccttgaccagcttaaaatagttcatctggaccctgtgtttcagagactccaagggagaggtgcagccgaagtatcttttgattacatcattggtggatatcagcggattaaagacgagtacaacaagtctgcaaaaggcgccgaagatgtgattgccaaagtgtttgtggagcttcatgcgatggaaatgttaatacaaaatctagaggaagaaaggaaacgatttagagaacaaatggagattgaaaggaaggcacagcgagatcaaatggacaacatgaaggcggcgagcatgaaacatgcacaagacaaacgaagagcattcgtcgaagaaaatcaagctttacaacaccgtctcctggcattacaaaattgcaacgaagacaacatgaaaatgataaagaagttatctgacgtaaccgcccaacaaaagagagaaaaagtggaactccttcaaaagatgaaggatcaagtcgatgtcgaccaggaaacgttaataaagaagatcaatgataaacacgatgaggagatgaatgcactccgtgatgacatgaatgcaaagctggatgaggtgatcaaacacgccccaccagatgaaacagtgagatgtggaacgccaggattgataaataaacgaactaaggaagcagactgtcttcagaaaaagatcgatgaaactcataagaaacagcaagctgtagagaaaccaagtttcttcaaaagagcgctaaaagttgtgggtcaaatagtaccaattgcaggcttagtggtttctgttgttttgcctcctgttgcttccatcgttgtaccagttactgctgttgctggcaaagctattgagtttgtttcagaccatgtctgtagtgttatgtaa

Transcript

g1655.t1

ATGACAGGTATTCGTGCTTCTAAAAAAGGAGCATGCGCAATACCGCTTTGTGTACCGAACAACTATGTGTGGAACCCACTGACAGGAAAGATTATCAAGACAGAGGCCGAGCGCTCTTCGCTAGAAGTGGTCGATGAAGCACTTGAGAAACTTAGGGAGATAAAAGGTCCTGTGTGCGTGGTATCTATTGCTGGTCCGTACAGAAAGGGCAAGTCGTATATCTTAAGCGAAGCTTTTGACCAACCAGACGTTTTCCCTCTTGGACACCAAATGGTGCCCGAGACCATGGGCATATGGTTATGGATTGTACCTGGAAAATATaagGATTGCAATGGACAGGAATTCACAGTAGTGCTCCTGGACTCTGAAGGAATCGATTCTACAACTAGTGAAAGTTTTGACGACCATCAGATTTTCACGTTAACCGTTCTGTTAGCTTCTGTCTTAATCTACAATTCCCAAGGTGTTCCGACAAGAAATGACGTAGAGAAACTGGACTTTATAGTAAAGCTCTCTAAAAGAATCCAGGTAAGATCCACTGTCTCTGGTCCGTCTCAGAGTCGTCTGGCTGAAGACAAAGAATTCTTTCACAAGACATTTCCTCAATTCGTTTGGCTCTTGAGAGATGTAACACAAGACATTCCAGAAGACTGCAAAGATGTTAAGGAGTACTTCTTAAAAAAGGTTTTCAAAGATCATCCGGGCCAACAAGTATCTGAAAGTATCTTACGCTTATTTGCTGGTTTTGAAGCGTTTTCTTTGCCTCCTCCCACAACTGATAAGGAAACGATGAAAAGCCTAAACCAGAAAAAAAGTCTCGCTGCCTTGGTTGTGCTTTACGTTGAAGCGATTAACACCCCTGATGCTATTCCTAATGTGCAGAAGGCCTGGGACACATTCGTCTTAGCGAAATGTTTGGACGTGAAACAGGCTGCCTTGCAGACGTATGATGCACTCATGACGTCACAGTTATCCGATGTACTGCCATGTAGCAATACTGAGATAAGAACAAGCCATGACGCTGCTCTGAAAGAGTGTGAATCTCAGTTTATAATGGAATTATCTGGAATATCTACAAACTCAATTGAAATGGCTTCGAGAGAGCTTAAGGAATCTGTAGACAAGAAGTTAACCTCGTGGCTGACCGACAATGAAGTGAAAACCAGACGATTTTGTAAAGATCTCCTTGACCAGCTTAAAATAGTTCATCTGGACCCTGTGTTTCAGAGACTCCAAGGGAGAGGTGCAGCCGAAGTATCTTTTGATTACATCATTGGTGGATATCAGCGGATTAAAGACGAGTACAACAAGTCTGCAAAAGGCGCCGAAGATGTGATTGCCAAAGTGTTTGTGGAGCTTCATGCGATGGAAATGTTAATACAAAATCTAGAGGAAGAAAGGAAACGATTTAGAGAACAAATGGAGATTGAAAGGAAGGCACAGCGAGATCAAATGGACAACATGAAGGCGGCGAGCATGAAACATGCACAAGACAAACGAAGAGCATTCGTCGAAGAAAATCAAGCTTTACAACACCGTCTCCTGGCATTACAAAATTGCAACGAAGACAACATGAAAATGATAAAGAAGTTATCTGACGTAACCGCCcaacaaaagagagaaaaagtGGAACTCCTTCAAAAGATGAAGGATCAAGTCGATGTCGACCAGGAAACGTTAATAAAGAAGATCAATGATAAACACGATGAGGAGATGAATGCACTCCGTGATGACATGAATGCAAAGCTGGATGAGGTGATCAAACACGCCCCACCAGATGAAACAGTGAGATGTGGAACGCCAGGATTGATAAATAAACGAACTAAGGAAGCAGACTGTCTTCAGAAAAAGATCGATGAAACTCATAAGAAACAGCAAGCTGTAGAGAAACCAAGTTTCTTCAAAAGAGCGCTAAAAGTTGTGGGTCAAATAGTACCAATTGCAGGCTTAGTGGTTTCTGTTGTTTTGCCTCCTGTTGCTTCCATCGTTGTACCAGTTACTGCTGTTGCTGGCAAAGCTATTGAGTTTGTTTCAGACCATGTCTGTAGTGTTATGTAA

Protein

Uniprot

Uniprot term	Description
Q0ZHH6	Atlastin-3 OS=Rattus norvegicus OX=10116 GN=Atl3 PE=2 SV=2
Q91YH5	Atlastin-3 OS=Mus musculus OX=10090 GN=Atl3 PE=1 SV=1
Q6DD88	Atlastin-3 OS=Homo sapiens OX=9606 GN=ATL3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02263	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015894	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR036543	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan
IPR030386	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20908	GBP6; guanylate-binding protein 6	-	Signaling proteins	-	deepkoala