Gene detail

Detailed information of g166.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_002160240.2, TLC domain-containing protein 2 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8WGS4	TLC domain-containing protein 2 OS=Danio rerio OX=7955 GN=tlcd2 PE=2 SV=1
Q8VC26	TLC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Tlcd2 PE=2 SV=1
G5EF48	TLC domain-containing protein fld-1 OS=Caenorhabditis elegans OX=6239 GN=fld-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000242 (this species only)
Orthogroup (gene family)	OG0000378 (this species only)
Orthogroup (gene family)	OG0001366 (this species only)
Orthogroup (gene family)	OG0001627 (this species only)
Orthogroup (gene family)	OG0003602 (this species only)
Orthogroup (gene family)	OG0006424 (this species only)
Orthogroup (gene family)	OG0008927 (this species only)
Orthogroup (gene family)	OG0010070 (this species only)
Orthogroup (gene family)	OG0011032 (this species only)
Orthogroup (gene family)	OG0019283 (this species only)
Orthogroup (gene family)	OG0059834 (this species only)
Orthogroup (gene family)	OG0171073 (this species only)
Orthogroup (gene family)	OG0173938 (this species only)
Orthogroup (gene family)	OG0174566 (this species only)
Transcription factor family	bHLH · all TF in this species
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03798 all species →	TRAM_LAG1_CLN8	TLC domain	Domain	Interproscan
PF11029 all species →	DAZAP2	DAZ associated protein 2 (DAZAP2)	Family	Interproscan
PF03184 all species →	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF01663 all species →	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase	Family	Interproscan
PF07521 all species →	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF13598 all species →	DUF4139	Domain of unknown function (DUF4139)	Family	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006634 all species →	Domain	TRAM/LAG1/CLN8 homology domain	Interproscan
IPR050846 all species →	Family	TLC domain-containing	Interproscan
IPR022730 all species →	Family	DAZ associated protein 2	Interproscan
IPR004875 all species →	Domain	DDE superfamily endonuclease domain	Interproscan
IPR050863 all species →	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR002591 all species →	Family	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	Interproscan
IPR011108 all species →	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan
IPR050698 all species →	Family	RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR001844 all species →	Family	Chaperonin Cpn60/GroEL	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR018370 all species →	Conserved_site	Chaperonin Cpn60, conserved site	Interproscan
IPR050433 all species →	Family	Myc family transcription factors	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR002418 all species →	Family	Transcription regulator Myc	Interproscan
IPR011935 all species →	Family	Conserved hypothetical protein CHP02231	Interproscan
IPR037291 all species →	Domain	Domain of unknown function DUF4139	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13439 all species →	CT120 PROTEIN	Interproscan
PTHR31638 all species →	DAZ-ASSOCIATED PROTEIN 2	Interproscan
PTHR19303 all species →	TRANSPOSON	Interproscan
PTHR10151 all species →	ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE	Interproscan
PTHR11203 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Interproscan
PTHR45633 all species →	60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL	Interproscan
PTHR45851 all species →	MYC PROTO-ONCOGENE	Interproscan
PTHR31005 all species →	UNCHARACTERIZED	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24393 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007009 all species →	Biological Process	plasma membrane organization	Interproscan
GO:0055088 all species →	Biological Process	lipid homeostasis	Interproscan
GO:0055091 all species →	Biological Process	phospholipid homeostasis	Interproscan
GO:0071709 all species →	Biological Process	membrane assembly	Interproscan
GO:0097035 all species →	Biological Process	regulation of membrane lipid distribution	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0042026 all species →	Biological Process	protein refolding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0009408 all species →	Biological Process	response to heat	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0051085 all species →	Biological Process	chaperone cofactor-dependent protein refolding	Interproscan
GO:1990220 all species →	Cellular Component	GroEL-GroES complex	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04077	groEL, HSPD1; chaperonin GroEL	EC:5.6.1.7	Exosome	ko04147	deepkoala
K04377	MYC; Myc proto-oncogene protein	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.