Gene detail

Detailed information of g16640.t4 in Acropora digitifera

Genomic Location: chr7Alt:32246057...32261561
NR annotation: XP_044164276.1, uncharacterized protein LOC114976897 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16640.t4

ATGCAACATCCGCTTAAAGTATTCAGCCAATCCAAAGCACGAAAAGCGATAACAGCGAGACCAATATTTTGGGAGTTTTCTGGCATATGGGCGTTCGAAACAGCAATGGATTCCAACAAAGACAAGTATTTAGTAATTCCTGTTGAAGAAAGGGAAATGGAAAACAGAAACTCTGATAGTGAATCTACAGATCGCGACTATGAGTTTGAGATGAAATTTGACAAGGACTTTTGGCTGAAGGTTCAAGACAGAGTTAAAAGTACGAAGTTATCCTGGAGCAGAGCAATGGATGAAGTGCGTGCAGATTGCTTGATGGAAAAATATGGAAAGAATGTGCTTCTTGTGATAATCCATGAATGGCCGCAGAGAAGAAAATACAAAGAAAAGCCAGAAGTGCTTCCAAGTTTAGAATATCTGATTAGTCGCCTGACAGAAATCATTCTTGAAAGAGACACCAAAGAAGATTACAAATATTTCCGTGTAGCTTCGAAGGATGACCCTACTCGCCCAACGTTGCTGCATCTTGCTGCTGAGCAGAATTTCTTGCATGTCTCAAAAGCTTTGGTGGAACATTATCCAGGTCTCATGTACATATACAGCAAAGAACAGGAGGAGAAGCCCAGTTATTTACCAGTTGAGTTAGCTTTGAAGAAATACAAAGATGATACAGCAGCGTATTTGATATCTCAAATGCGACATGATAGAGTACAAAAGCTATTTCTGTGCCAAGAAAACGAAGCGCAGACCCCAATGAAGTTTTATTTTGGAGATTACATCAGCTGCCAAGATGCGAAAACAAAGGAACCCCTGATGAAGAAAACAGTGCTGGCGATTTTAGATAAACACATCAATCCGCGATGGCCATATTTACCGGAGATGAAAGAGGACGAAGAAAATGACAGTGAACTGGAGCGAGCTTTCAGTAGCGTGCCAGATGATCCAATGAACTACGACTTCTTTTATCACATACTTGAAGCAGATGACAAGGGAAGGCAGCCTAAGATTGAAGTCACAACTGAAGTGGACGAGCATGGAGCTTCTCTGAACACTGGAATGATTGCGAATCCCAAATTCAACGCCAAGTCTTTGTCATGTCTGAGACGAATTGCAGAAAGTGGACACAAGGAGGCAATTCAACACCCTGTGGTCCGAATGCTTGTCTCAAGGAAGTGGAACAAGTTCGCTCATATTTGGTTTTGCGTTCAAGCAGCATTCTATGTTCTCTTCCTGATTGTGTTGTCCTTTGCGCTTATTCATGGTTCAACTCAAGACGACCCAACGCAGTACAGTGGTAAAGCTAATGGCCTGCGCTTGTTCTGTGAAGCCCTTTCTATCATTTTTCTTATGTTTTACTTTTTTGAGGAGGTCAACCAAGCGGAACGGGAATGGCAAACATATTTCAAGGATCCATATAACTATTTTGATTGGCTTGGTTTGATCTTAACATTCCTTGTGATTCCTCTCCGGTTTGTTGGACTCGATTCTCAGTGGAGCGTAGCCGCACTCGGATACTTGTTCAATTTTCTCAGACTTTTCAAGTTCTCCTGCGTTACAAGGACCACTGGTTTGTACACCAAGACTCTTGCCAAGATAGTCTACCGTGACATATCTCGATTTTGTGTTGTATTTGTCGTCATTTTTCTTGGATTTTGTGGCTCCATGTACATGGCACTTAAGGCTACAGCATCACAGAAACATTTCAGTAATTTCAGCTGGTTGATGTTGGCTGCTGTTCGAGCTCTGTTTGAGCAACAGCCTGTTGAAGAAGACTATTCGAAATTCAGGTGGCTTGCAATACTCATTCTCTTGTCCTACATGGCCATGGTGATCGTTATTATGCTGAATATCCTCATTGCTCAGATGAGTTACACCTACAGCGAGGCTAAGCGAACAGCTAAGCTACAATACGCTGTGGACACCATGTTGATTACCGCTCGCTTGGAGTACAGCCGATTCGCTAGATGGAACTTAAGGGTGAAGAATTACATAAATGGGGACTGGATTAGTGAGAAGGATTTAGCAAAAGAAATGCTGGAATATTCGGAGGACAGTCATCCTTGGGAAACAATGGAAGAGAAGCTGACAAACATCAGGGAACTGATGAGAAAAGTAGTGAGAAGAGTAAAGGACTCAGATCCATTAGGGAGCATAGACGACAAATTGAACAATTTGACGTAA

Transcript

chr7Alt.g16640.t4

GGTTATTATGAACAAAGAAGTGCACATGGTACGCGGTCACACAAATACGAACGACGAGACTTCACATGCCACTAGTAATGTAAAGAAGAGATCTCTTGAAATTTCTGATTACTTTTCCAAACAAAATCGAAAATCTTCTTTATCTGACGATAATAGCGCACTGCAATAAACTGGGCCCTTGTCGAGTAAGTTCCGGTTGTATAAATATGCAACAATGCAACATCCGCTTAAAGTATTCAGCCAATCCAAAGCACGAAAAGCGATAACAGCGAGACCAATATTTTGGGAGTTTTCTGGCATATGGGCGTTCGAAACAGCAATGGATTCCAACAAAGACAAGTATTTAGTAATTCCTGTTGAAGAAAGGGAAATGGAAAACAGAAACTCTGATAGTGAATCTACAGATCGCGACTATGAGTTTGAGATGAAATTTGACAAGGACTTTTGGCTGAAGGTTCAAGACAGAGTTAAAAGTACGAAGTTATCCTGGAGCAGAGCAATGGATGAAGTGCGTGCAGATTGCTTGATGGAAAAATATGGAAAGAATGTGCTTCTTGTGATAATCCATGAATGGCCGCAGAGAAGAAAATACAAAGAAAAGCCAGAAGTGCTTCCAAGTTTAGAATATCTGATTAGTCGCCTGACAGAAATCATTCTTGAAAGAGACACCAAAGAAGATTACAAATATTTCCGTGTAGCTTCGAAGGATGACCCTACTCGCCCAACGTTGCTGCATCTTGCTGCTGAGCAGAATTTCTTGCATGTCTCAAAAGCTTTGGTGGAACATTATCCAGGTCTCATGTACATATACAGCAAAGAACAGGAGGAGAAGCCCAGTTATTTACCAGTTGAGTTAGCTTTGAAGAAATACAAAGATGATACAGCAGCGTATTTGATATCTCAAATGCGACATGATAGAGTACAAAAGCTATTTCTGTGCCAAGAAAACGAAGCGCAGACCCCAATGAAGTTTTATTTTGGAGATTACATCAGCTGCCAAGATGCGAAAACAAAGGAACCCCTGATGAAGAAAACAGTGCTGGCGATTTTAGATAAACACATCAATCCGCGATGGCCATATTTACCGGAGATGAAAGAGGACGAAGAAAATGACAGTGAACTGGAGCGAGCTTTCAGTAGCGTGCCAGATGATCCAATGAACTACGACTTCTTTTATCACATACTTGAAGCAGATGACAAGGGAAGGCAGCCTAAGATTGAAGTCACAACTGAAGTGGACGAGCATGGAGCTTCTCTGAACACTGGAATGATTGCGAATCCCAAATTCAACGCCAAGTCTTTGTCATGTCTGAGACGAATTGCAGAAAGTGGACACAAGGAGGCAATTCAACACCCTGTGGTCCGAATGCTTGTCTCAAGGAAGTGGAACAAGTTCGCTCATATTTGGTTTTGCGTTCAAGCAGCATTCTATGTTCTCTTCCTGATTGTGTTGTCCTTTGCGCTTATTCATGGTTCAACTCAAGACGACCCAACGCAGTACAGTGGTAAAGCTAATGGCCTGCGCTTGTTCTGTGAAGCCCTTTCTATCATTTTTCTTATGTTTTACTTTTTTGAGGAGGTCAACCAAGCGGAACGGGAATGGCAAACATATTTCAAGGATCCATATAACTATTTTGATTGGCTTGGTTTGATCTTAACATTCCTTGTGATTCCTCTCCGGTTTGTTGGACTCGATTCTCAGTGGAGCGTAGCCGCACTCGGATACTTGTTCAATTTTCTCAGACTTTTCAAGTTCTCCTGCGTTACAAGGACCACTGGTTTGTACACCAAGACTCTTGCCAAGATAGTCTACCGTGACATATCTCGATTTTGTGTTGTATTTGTCGTCATTTTTCTTGGATTTTGTGGCTCCATGTACATGGCACTTAAGGCTACAGCATCACAGAAACATTTCAGTAATTTCAGCTGGTTGATGTTGGCTGCTGTTCGAGCTCTGTTTGAGCAACAGCCTGTTGAAGAAGACTATTCGAAATTCAGGTGGCTTGCAATACTCATTCTCTTGTCCTACATGGCCATGGTGATCGTTATTATGCTGAATATCCTCATTGCTCAGATGAGTTACACCTACAGCGAGGCTAAGCGAACAGCTAAGCTACAATACGCTGTGGACACCATGTTGATTACCGCTCGCTTGGAGTACAGCCGATTCGCTAGATGGAACTTAAGGGTGAAGAATTACATAAATGGGGACTGGATTAGTGAGAAGGATTTAGCAAAAGAAATGCTGGAATATTCGGAGGACAGTCATCCTTGGGAAACAATGGAAGAGAAGCTGACAAACATCAGGGAACTGATGAGAAAAGTAGTGAGAAGAGTAAAGGACTCAGATCCATTAGGGAGCATAGACGACAAATTGAACAATTTGACGTAAGTGAATGTCGAGGATGGTTTAAGTTTAAACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1D5PXA5	Transient receptor potential cation channel subfamily V member 4 OS=Gallus gallus OX=9031 GN=TRPV4 PE=1 SV=1
Q9HBA0	Transient receptor potential cation channel subfamily V member 4 OS=Homo sapiens OX=9606 GN=TRPV4 PE=1 SV=2
Q9ERZ8	Transient receptor potential cation channel subfamily V member 4 OS=Rattus norvegicus OX=10116 GN=Trpv4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR024862 all species →	Family	Transient receptor potential cation channel subfamily V	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10582 all species →	TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0098703 all species →	Biological Process	calcium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g16640.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.