Gene detail

Detailed information of g16668.t1 in Acropora digitifera

Genomic Location: chr7Alt:32696185...32702596
NR annotation: XP_029198051.1, spindle assembly abnormal protein 6 homolog [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16668.t1

ATGGTCGTTTTCTGTATTTTTTTCGTGATGCGTTCCAAGGTACTTGTGGGAACAAATATCATGTGGGGCCTGGGAACAGGCGCGAATTTTATTTCCAAAGTTTTCAAGATGGCTGACTACTTCAACAAAGTCTTAGCAGTTCACTTCAGATCGTCAAACCGGGAAAATAGGCAATCTGCAGTTCGCATTAATGTTTCTTTTCGCTCAAGCTCCTCTTCAGCAAACAAGGAGTTAGTCGTTCGAATTACAGATGAAGAAGATCTTTTCTTTCTCTACAATCTGGCCCTTGGGGAGGCTGATTTCCATACATTGAAAAGTCAGCAGGGATTGCTAGTTGACTTTTGTGCCTTTCCTCAGAAGTTTGTTGATCTCCTAGAACTTTGTCTTGATGAAGAACAACGCGAAAACCCAAAATTTCTGCTGCAGTTTAATGTTGGAAGTGGCTTGGATCAAGGGGTTGGTACTCTGTATGTAGTAGAAACAAACCCATTCAAACACTTAACCCATCTGTCTTTAAAGTTTCTTCCTGGGTCAGATGCTGAAGTGAAAAAATACCTCGCAGACTGCCTTAAAAATCTTCAGGATGAAAAGCTGTCACTAGAAAGACGTCTTGCTAGTACAGAAGCTGATCTTCAACAAAAGCTTAGCAGCTGTCAAGAGGTTCTTGCAATAAAGACAAGAGAATTAAATTCAGTACAATCAGACTGCTCAGCAAGATCAAACCAACTGGAAAACAAGCATGCTCAGGAACTTACAGCTGAGAGGGAAAAAGCTCTTCAGTTGGCCACTGCCAGCCAACAACAGTTTGAAAGAGAAAAACGAGCGATTGAACAAAATTGTCAGTCACAGATCATGAAACTTGAGTCAAGACTAACGGAAGCAGAGAATTCAAACAGGGACCTTACTCAAAAGAAATATCAAGCAGATTCTTGTATAAGAGATCTGAAGTCAAAACTTACAGTCCTTGAAGAGGATTGTAAGTATAGCAAGCAAGAGCTCCAGAAGCTTCGACGTGAAAATGGTTCACTTGACTCTGAGAGACATGAACACAGCAAAACATTGAGTCAACTGCACACCAAAGTGGCTGTGATGGAACAGGAGATAAGAGATAAAGAACAGGTCATAGCACGGACTAATGAGTTGATGGAAAACTCTAACGAACAGCAAAGGAAGCAAGAAAAAATGCTGGAAGAAAGACAAGAACAGATAAATAAACTAGAAGCTACAATGAAATCTGTTTCAGCTGAAGTGATAAAGGGAAATGAAATAATTCAAAGATTGCAGTCAGAGTTACGAAATTATAAGTCAAAGATGAAACTGAAAAATGTGGTCACCACGAAACAAGAGAAACTTATATCTGAAAAGGAAGCAACACTTGAAAAGTGTCAGCAGGAAAATACAAGCTTACAAACTAGCTTGAAGAATAAGGAAGAAGAGGTGAAGAAGTTGAATGATTCACTTGAGTCAACTGCAGCAAAGCTAGAGGAAAGCAAACAGTTGTTGAAAACAAACGAAAATGTTATCAACTGGCTGAACAAACAAATGAACGACCAAATGATGTCGCATCAACATCTTGGACCATTTGAAATGCACTCAAAAACAAGGCCAAGTGCTCGAGGGCCTCCTTTAGTCCCCTATAACAAGATGAGAGACACGAATGTTGGCTCCAGTTCTTCTGGCAACGGGACAGAGATACCACGCATCGTAGAGGCACCACAGGTGGCTTACAGAAAACCGGGCCCTCGTCCAGCGATACTGCCTCAACCAATAGGCCAGTCGACACCAAGTCTTCCCCCTGGCAGTATCCAATCAGCTGCAGGTGTTACCTCACTAAGCCGCCCCATCATCCTTACTGGAAACAGTGCCGTCAGCAGTGAACCCATTCTGGACGCCAAGTATTTTCGTCCGACGGTAACTGGAGCAAATTCACAGAAGCCTGGACCAGAGCCACCCCTCCTCTCCGCGTATTTTCCAAAACCGCGTGCTAATTTACCTTCCACGTGA

Transcript

chr7Alt.g16668.t1

CTTTCCGTTTTACTCCGGTGAAGGCTGTAAGATTGGCATGGTCGTTTTCTGTATTTTTTTCGTGATGCGTTCCAAGGTACTTGTGGGAACAAATATCATGTGGGGCCTGGGAACAGGCGCGAATTTTATTTCCAAAGTTTTCAAGATGGCTGACTACTTCAACAAAGTCTTAGCAGTTCACTTCAGATCGTCAAACCGGGAAAATAGGCAATCTGCAGTTCGCATTAATGTTTCTTTTCGCTCAAGCTCCTCTTCAGCAAACAAGGAGTTAGTCGTTCGAATTACAGATGAAGAAGATCTTTTCTTTCTCTACAATCTGGCCCTTGGGGAGGCTGATTTCCATACATTGAAAAGTCAGCAGGGATTGCTAGTTGACTTTTGTGCCTTTCCTCAGAAGTTTGTTGATCTCCTAGAACTTTGTCTTGATGAAGAACAACGCGAAAACCCAAAATTTCTGCTGCAGTTTAATGTTGGAAGTGGCTTGGATCAAGGGGTTGGTACTCTGTATGTAGTAGAAACAAACCCATTCAAACACTTAACCCATCTGTCTTTAAAGTTTCTTCCTGGGTCAGATGCTGAAGTGAAAAAATACCTCGCAGACTGCCTTAAAAATCTTCAGGATGAAAAGCTGTCACTAGAAAGACGTCTTGCTAGTACAGAAGCTGATCTTCAACAAAAGCTTAGCAGCTGTCAAGAGGTTCTTGCAATAAAGACAAGAGAATTAAATTCAGTACAATCAGACTGCTCAGCAAGATCAAACCAACTGGAAAACAAGCATGCTCAGGAACTTACAGCTGAGAGGGAAAAAGCTCTTCAGTTGGCCACTGCCAGCCAACAACAGTTTGAAAGAGAAAAACGAGCGATTGAACAAAATTGTCAGTCACAGATCATGAAACTTGAGTCAAGACTAACGGAAGCAGAGAATTCAAACAGGGACCTTACTCAAAAGAAATATCAAGCAGATTCTTGTATAAGAGATCTGAAGTCAAAACTTACAGTCCTTGAAGAGGATTGTAAGTATAGCAAGCAAGAGCTCCAGAAGCTTCGACGTGAAAATGGTTCACTTGACTCTGAGAGACATGAACACAGCAAAACATTGAGTCAACTGCACACCAAAGTGGCTGTGATGGAACAGGAGATAAGAGATAAAGAACAGGTCATAGCACGGACTAATGAGTTGATGGAAAACTCTAACGAACAGCAAAGGAAGCAAGAAAAAATGCTGGAAGAAAGACAAGAACAGATAAATAAACTAGAAGCTACAATGAAATCTGTTTCAGCTGAAGTGATAAAGGGAAATGAAATAATTCAAAGATTGCAGTCAGAGTTACGAAATTATAAGTCAAAGATGAAACTGAAAAATGTGGTCACCACGAAACAAGAGAAACTTATATCTGAAAAGGAAGCAACACTTGAAAAGTGTCAGCAGGAAAATACAAGCTTACAAACTAGCTTGAAGAATAAGGAAGAAGAGGTGAAGAAGTTGAATGATTCACTTGAGTCAACTGCAGCAAAGCTAGAGGAAAGCAAACAGTTGTTGAAAACAAACGAAAATGTTATCAACTGGCTGAACAAACAAATGAACGACCAAATGATGTCGCATCAACATCTTGGACCATTTGAAATGCACTCAAAAACAAGGCCAAGTGCTCGAGGGCCTCCTTTAGTCCCCTATAACAAGATGAGAGACACGAATGTTGGCTCCAGTTCTTCTGGCAACGGGACAGAGATACCACGCATCGTAGAGGCACCACAGGTGGCTTACAGAAAACCGGGCCCTCGTCCAGCGATACTGCCTCAACCAATAGGCCAGTCGACACCAAGTCTTCCCCCTGGCAGTATCCAATCAGCTGCAGGTGTTACCTCACTAAGCCGCCCCATCATCCTTACTGGAAACAGTGCCGTCAGCAGTGAACCCATTCTGGACGCCAAGTATTTTCGTCCGACGGTAACTGGAGCAAATTCACAGAAGCCTGGACCAGAGCCACCCCTCCTCTCCGCGTATTTTCCAAAACCGCGTGCTAATTTACCTTCCACGTGACTACTCCGTCAGTAGTTGTGTATTAATCACAATTACATTTACTTTAACTATGAAGTACTAACAGATTTCCAAATGAAATTTTAACAATGGTCAATAAAATCATATATTTTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZMV2	Spindle assembly abnormal protein 6 homolog OS=Gallus gallus OX=9031 GN=SASS6 PE=2 SV=1
Q7ZVT3	Spindle assembly abnormal protein 6 homolog OS=Danio rerio OX=7955 GN=sass6 PE=1 SV=1
Q80UK7	Spindle assembly abnormal protein 6 homolog OS=Mus musculus OX=10090 GN=Sass6 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18594 all species →	Sas6_CC	Sas6/XLF/XRCC4 coiled-coil domain	Coiled-coil	Interproscan
PF16531 all species →	SAS-6_N	Centriolar protein SAS N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041513 all species →	Domain	SAS-6 coiled-coil domain	Interproscan
IPR032396 all species →	Domain	Spindle assembly abnormal protein 6, N-terminal	Interproscan
IPR038558 all species →	Homologous_superfamily	SAS-6, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44281 all species →	SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007099 all species →	Biological Process	centriole replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16487	SAS-6, SASS6; spindle assembly abnormal protein 6	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.