Gene detail

Detailed information of g16718.t1 in Acropora digitifera

Genomic Location: chr8Alt:363054...367865
NR annotation: XP_015762027.1, PREDICTED: pyridoxine-5'-phosphate oxidase-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5E9K3	Pyridoxine-5'-phosphate oxidase OS=Bos taurus OX=9913 GN=PNPO PE=2 SV=1
Q1PCB0	Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bombyx mori OX=7091 GN=PNPO PE=1 SV=1
B0C079	Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=pdxH PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01243 all species →	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase	Domain	Interproscan
PF10590 all species →	PNP_phzG_C	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012349 all species →	Homologous_superfamily	FMN-binding split barrel	Interproscan
IPR000659 all species →	Family	Pyridoxamine 5'-phosphate oxidase	Interproscan
IPR011576 all species →	Domain	Pyridoxamine 5'-phosphate oxidase, putative	Interproscan
IPR019740 all species →	Conserved_site	Pyridoxamine 5'-phosphate oxidase, conserved site	Interproscan
IPR019576 all species →	Domain	Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10851 all species →	PYRIDOXINE-5-PHOSPHATE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004733 all species →	Molecular Function	pyridoxamine phosphate oxidase activity	Interproscan
GO:0008615 all species →	Biological Process	pyridoxine biosynthetic process	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0042823 all species →	Biological Process	pyridoxal phosphate biosynthetic process	Interproscan
GO:0016638 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00275	pdxH, PNPO; pyridoxamine 5'-phosphate oxidase	EC:1.4.3.5	Vitamin B6 metabolism	ko00750	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g16718.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

83.1Max TPM

23.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	23.80	83.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	83.13
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	57.42
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	49.98
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	49.44
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	47.57
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	42.54
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	42.43
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	39.87
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	38.36
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	36.17
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	35.15
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	31.94
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	30.97
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	30.00
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	24.93
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	24.31
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	19.41
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	17.99
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	16.93
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	16.09
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	15.94
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	15.33
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	15.09
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	14.15
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	13.72
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	13.16
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	12.26
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	11.95
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	10.91
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	10.74
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	9.28
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	9.00
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	8.64
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	8.14
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	6.37
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	5.73
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	5.54
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	5.06
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	2.75

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.