Gene detail

Detailed information of g16728.t1 in Acropora digitifera

Genomic Location: chr8Alt:461055...468804
NR annotation: XP_015752235.1, PREDICTED: LOW QUALITY PROTEIN: cyclin-dependent kinase 12-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16728.t1

ATGCCCAGTTCCCGAAATGAGAAGGAATTGAGTCTTGCCGCTAGAAATCATAGCAAAAGCAAAAAGTCATCCCATAAACCAAAGAAACATAAGAAACGTCCCAAACCCGAGACATCGGCTGAAAATTTTAGGGGACAGTATGAAGATATCTCCTCAGCATCGGATGAAACTGCGGAGTTGCCTGTTCAAAAATACAGCTCTATATCACCGAGCCCCTCGCCCGAAGCGTCGAAAAACACAGCACCTAATGTAAAGAGGAAGAAGCCAAAAAAGGAACCTTCCATGCATCGATCAAGTAAAAGTAAAAAGGACAAGAAACGGGGCAAGTCGCCTATAGATCTTCCACATCATTCTTACCAGGCTGGTCCACCATTGTCGCCAGTTTCGAGTTCAAAATGGAAAGATGTGGCACCATCGCCAGAGCCTGTTCTAAGTAGCAAGGATATCCATCAATTTTCGTCGCCTGTGTCAAGGAAACGTAGGTCAGAGTCTCCTTACCTACCTAGAGCTTACAGACCCTTAAAATCACCGAGCATAAGCCCCTCTAGGTCACCGTACAACAGACGAAGGTCTCCCATTAGGGACAGATCGCCAATGAAAGTTTGGTCAATGTCGCCCTATAGCCATAGATCAAGATCGCCCACACCTCCAAGAGGGAGGTCACCAGTAAGAACTTACAAATCTTTGGAACAGTCCCCTTATCATTCTCCTACTGGCAGGTTCTCACCACATAGCCGCAACAAGGCAGCATTTAGTCGTAGGCAGTCACCTTCACCTTATGGACGACACTCACCATCACCAACAATAATTAGGAACACTGGCATAAGGAGTAAGCCAACTCAAAGGAACAGACCACGCAGTAGATCTCTGTCACCACATGAGCAAAAATATGAGAAGTCACCAGTTACTAGGACAAAAAATTGGAGTCGATCACCTCCACCACCTTACAGATCGCGAAGAAGTGCACCTCGCAGCCCAGAGTTTCATAAGTCAAGATCTGAAACCAAAAGTACCCCTCGGAAAAGAGAAAAGTTTCCAAGAAATGAGCCAAGGATTGCTGAAACAAAGTCTGTGAGCAGAGACTCGGCTGTGAAATTATCCAACTCCAAGGATAATTTAAATAAAAATAAGAACAAGGTTGATTCTGTGGATGGACTGAAACGAAATCAAACAAAGAATCCTGAACATTCTGTGAAAAAAGCAAACAAGCAAGGTGTAGAAAGCAATAACAAAGATTTGTTGGCAAATGGACCATTAAAGACTTCAAGTTCAACTGAAGTGAGAAAGTCATCCATAGACAATGAAAAGGTTTGTCAAACTGAATCCAAGCCAGCTCTTCCTCTTCCCCCTTTGAATGATCCAGTACCTCCACCTCTCCCTAGTGAGGAGCCTCCACCATTACCTCCAGATGAAGAAAAGCCACCTCCACCACCTGCGCCAACTTTACCACCTCTACCTCTGCCACCTGAATTACCAGGAACACCATGTGAATCACCAACATCATATTCACCTCACTCACCTGATGGAAAGCCTCCAGACTCACCAAAATCAGACCAACAATTGCAAGCTTCCAAGGACACAGACAGAACAGGTATTCCTTCTGTTTCTGGTCAAAGTAGTCAGAGCGGCACACCATTATCTACACCAGATACCACTCCTAGAACTCCAGCTGAAAGTGAGTGGGGGGAGAGATGTGTGGATATGTTTCAAATTATTGATCAAGTTGGGGAAGGAACCTATGGACAAGTATACAAAGCAAAGGACAAGATCACAGGAGAGCTTGTAGCATTGAAGAAGGTTAGGACTGATAATGAGAAAGAAGGCTTTCCCATAACAGCTGTGAGGGAAATAAAAATCCTTCGCCAATTGAATCATCCCAACATTGTCAACTTGAAAGAGATTGTAACGGACAAACCAAATGCCTTGGATTTTAGGAAGGATAAAGGTGGATTTTACCTTGTATTTGAGTATCTGGATCATGACCTAATGGGTGTACTGGAATCAGGTTTAGTTCACTTCACCGAAGATCATATCAAATCCTTTACAAAACAACTACTGGATGGTCTCAATTATTGTCACCGAAAGAATTTCCTTCATAGGGACATTAAGTGTTCCAACATTTTACTCAGCAACAAGGGCGAAATAAAACTGGCTGATTTTGGATTAGCAAGATTGTACGAAGCAGACGAGAGGCGACCATACACTAATAAAGTGATCACGCTGTGGTACAGACCACCTGAACTGTTGCTTGGAGAAGAACGTTATGGTCCTGGAATAGACATATGGAGTGTGGGATGCATTCTTGGAGAATTATTTACCAAGAAACCTATTTTTCCTGCAGTCCAAGAAATAGGCCAACTGGAGCTTATCAGTCGTATTTGTGGTACTCCCATGCCCGCTGTATGGCCTGATGTGATCCACTTACCTCACTTTCACACTATTAAACCAAAGAAACAGTACAGGAGAAGGGTAAAAGAAGAGTTTTCATTTATGCCAGCAGATGCTTTGGATCTGTTCGATCGCATGCTGACCTTAGATCCCTCAAAACGCATCACTGCAGAAGAATCACTGCAACATCCATTTCTGAAAGATGTTGTTTGTCAGAATATCAGCCCTCCAAGCTTACCAACATGGCAGGATTGTCATGAGATGTGGTGCAAAAAGAGGAGGCGCAAAGGGGAAGGAAAAGCCGCTGACGATGGAAGCTCAGGAAAGCAGGGTAGGCGAGAGTCAGTGGCTGACAATTTGGAACCTTCAATCGACCACCCTACTCAGATCCCAAAAGAGGACCAAGATGAGACTAACTCTTTCCCGCGCAGACAAAGCATTGAAACTATTGAGATGGAAACTGAAGATGTGCCAGAAAATGCCCATTCCATAAGAGATGAGCTTTCCTTCAGTGATGAAAAACTGCCAGAACAATATTCGTACACAGAAGAGCACCCAAAGGCAGCTTATTCACAAGATTCGTATTATCAACGTGACTATCAACAAGATTATAGTGAAGGTTCTAGAAACAGTATATTCAGGACTGATGAGGGCTATCCACGTCCTTATGCGAGGGAAAATTTTGACAATAGCAGAGCAAGTAGATATTCCCAGTCAAGTGTGCACTATGAACAACTGTCTCCACCCATTGATCATACTACAAGATCATACACTGATCAGTATAAACATTATGAGTATGACAGTGGTAGAAGGGAGAAAGATTATGATGAGTCCTCTTCACGTTACAGGGAGCAATCAGCTTCATACCTTTACAGAGAACGTTATTCAGATTCTTTTTCTCAGAAGCGGGAAATTTTTGATTACAGCGATTCACAATACAGTCATTATCCAGTGGGAGCTGAAAAAGTAAATAGCCCTGTCCGTGGTGTGGAGACTTGCTCAAGGTGGTAG

Transcript

chr8Alt.g16728.t1

CCATCCAGTATGGCGCCGGTATCGGAACAATAATATCATTGTGAAAATCCACTTTCATCTTGTTTCCTTGACCATGAAAATAAGTTTTTCATAAAAAAACATTATCTCAGTTTATTTATCTTTTGCTTTACGGGTTAAGTTCTCAATGACGTGAAAATGTAGGGACATTTCGGCCAAAAATAATCGGGATCAAGATGCCCAGTTCCCGAAATGAGAAGGAATTGAGTCTTGCCGCTAGAAATCATAGCAAAAGCAAAAAGTCATCCCATAAACCAAAGAAACATAAGAAACGTCCCAAACCCGAGACATCGGCTGAAAATTTTAGGGGACAGTATGAAGATATCTCCTCAGCATCGGATGAAACTGCGGAGTTGCCTGTTCAAAAATACAGCTCTATATCACCGAGCCCCTCGCCCGAAGCGTCGAAAAACACAGCACCTAATGTAAAGAGGAAGAAGCCAAAAAAGGAACCTTCCATGCATCGATCAAGTAAAAGTAAAAAGGACAAGAAACGGGGCAAGTCGCCTATAGATCTTCCACATCATTCTTACCAGGCTGGTCCACCATTGTCGCCAGTTTCGAGTTCAAAATGGAAAGATGTGGCACCATCGCCAGAGCCTGTTCTAAGTAGCAAGGATATCCATCAATTTTCGTCGCCTGTGTCAAGGAAACGTAGGTCAGAGTCTCCTTACCTACCTAGAGCTTACAGACCCTTAAAATCACCGAGCATAAGCCCCTCTAGGTCACCGTACAACAGACGAAGGTCTCCCATTAGGGACAGATCGCCAATGAAAGTTTGGTCAATGTCGCCCTATAGCCATAGATCAAGATCGCCCACACCTCCAAGAGGGAGGTCACCAGTAAGAACTTACAAATCTTTGGAACAGTCCCCTTATCATTCTCCTACTGGCAGGTTCTCACCACATAGCCGCAACAAGGCAGCATTTAGTCGTAGGCAGTCACCTTCACCTTATGGACGACACTCACCATCACCAACAATAATTAGGAACACTGGCATAAGGAGTAAGCCAACTCAAAGGAACAGACCACGCAGTAGATCTCTGTCACCACATGAGCAAAAATATGAGAAGTCACCAGTTACTAGGACAAAAAATTGGAGTCGATCACCTCCACCACCTTACAGATCGCGAAGAAGTGCACCTCGCAGCCCAGAGTTTCATAAGTCAAGATCTGAAACCAAAAGTACCCCTCGGAAAAGAGAAAAGTTTCCAAGAAATGAGCCAAGGATTGCTGAAACAAAGTCTGTGAGCAGAGACTCGGCTGTGAAATTATCCAACTCCAAGGATAATTTAAATAAAAATAAGAACAAGGTTGATTCTGTGGATGGACTGAAACGAAATCAAACAAAGAATCCTGAACATTCTGTGAAAAAAGCAAACAAGCAAGGTGTAGAAAGCAATAACAAAGATTTGTTGGCAAATGGACCATTAAAGACTTCAAGTTCAACTGAAGTGAGAAAGTCATCCATAGACAATGAAAAGGTTTGTCAAACTGAATCCAAGCCAGCTCTTCCTCTTCCCCCTTTGAATGATCCAGTACCTCCACCTCTCCCTAGTGAGGAGCCTCCACCATTACCTCCAGATGAAGAAAAGCCACCTCCACCACCTGCGCCAACTTTACCACCTCTACCTCTGCCACCTGAATTACCAGGAACACCATGTGAATCACCAACATCATATTCACCTCACTCACCTGATGGAAAGCCTCCAGACTCACCAAAATCAGACCAACAATTGCAAGCTTCCAAGGACACAGACAGAACAGGTATTCCTTCTGTTTCTGGTCAAAGTAGTCAGAGCGGCACACCATTATCTACACCAGATACCACTCCTAGAACTCCAGCTGAAAGTGAGTGGGGGGAGAGATGTGTGGATATGTTTCAAATTATTGATCAAGTTGGGGAAGGAACCTATGGACAAGTATACAAAGCAAAGGACAAGATCACAGGAGAGCTTGTAGCATTGAAGAAGGTTAGGACTGATAATGAGAAAGAAGGCTTTCCCATAACAGCTGTGAGGGAAATAAAAATCCTTCGCCAATTGAATCATCCCAACATTGTCAACTTGAAAGAGATTGTAACGGACAAACCAAATGCCTTGGATTTTAGGAAGGATAAAGGTGGATTTTACCTTGTATTTGAGTATCTGGATCATGACCTAATGGGTGTACTGGAATCAGGTTTAGTTCACTTCACCGAAGATCATATCAAATCCTTTACAAAACAACTACTGGATGGTCTCAATTATTGTCACCGAAAGAATTTCCTTCATAGGGACATTAAGTGTTCCAACATTTTACTCAGCAACAAGGGCGAAATAAAACTGGCTGATTTTGGATTAGCAAGATTGTACGAAGCAGACGAGAGGCGACCATACACTAATAAAGTGATCACGCTGTGGTACAGACCACCTGAACTGTTGCTTGGAGAAGAACGTTATGGTCCTGGAATAGACATATGGAGTGTGGGATGCATTCTTGGAGAATTATTTACCAAGAAACCTATTTTTCCTGCAGTCCAAGAAATAGGCCAACTGGAGCTTATCAGTCGTATTTGTGGTACTCCCATGCCCGCTGTATGGCCTGATGTGATCCACTTACCTCACTTTCACACTATTAAACCAAAGAAACAGTACAGGAGAAGGGTAAAAGAAGAGTTTTCATTTATGCCAGCAGATGCTTTGGATCTGTTCGATCGCATGCTGACCTTAGATCCCTCAAAACGCATCACTGCAGAAGAATCACTGCAACATCCATTTCTGAAAGATGTTGTTTGTCAGAATATCAGCCCTCCAAGCTTACCAACATGGCAGGATTGTCATGAGATGTGGTGCAAAAAGAGGAGGCGCAAAGGGGAAGGAAAAGCCGCTGACGATGGAAGCTCAGGAAAGCAGGGTAGGCGAGAGTCAGTGGCTGACAATTTGGAACCTTCAATCGACCACCCTACTCAGATCCCAAAAGAGGACCAAGATGAGACTAACTCTTTCCCGCGCAGACAAAGCATTGAAACTATTGAGATGGAAACTGAAGATGTGCCAGAAAATGCCCATTCCATAAGAGATGAGCTTTCCTTCAGTGATGAAAAACTGCCAGAACAATATTCGTACACAGAAGAGCACCCAAAGGCAGCTTATTCACAAGATTCGTATTATCAACGTGACTATCAACAAGATTATAGTGAAGGTTCTAGAAACAGTATATTCAGGACTGATGAGGGCTATCCACGTCCTTATGCGAGGGAAAATTTTGACAATAGCAGAGCAAGTAGATATTCCCAGTCAAGTGTGCACTATGAACAACTGTCTCCACCCATTGATCATACTACAAGATCATACACTGATCAGTATAAACATTATGAGTATGACAGTGGTAGAAGGGAGAAAGATTATGATGAGTCCTCTTCACGTTACAGGGAGCAATCAGCTTCATACCTTTACAGAGAACGTTATTCAGATTCTTTTTCTCAGAAGCGGGAAATTTTTGATTACAGCGATTCACAATACAGTCATTATCCAGTGGGAGCTGAAAAAGTAAATAGCCCTGTCCGTGGTGTGGAGACTTGCTCAAGGTGGTAGTAGATGTTATCCATTGAAATCCTTGAGTTGGTAAATAACAGGTTTCATTTTTCCCTTTTTTTTTTTTACCTTGAGAGGATAAAATAATTTTGTCCTCTCAATTGTCTTTTGGCAAGGGAAAAAAAGAAATCTCTCCTTCATTCTTACTAGGAAACATTTTCTCTCATTAAAAGAGTTTTATTTCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5DE93	Cyclin-dependent kinase 12 OS=Xenopus tropicalis OX=8364 GN=cdk12 PE=2 SV=1
Q14AX6	Cyclin-dependent kinase 12 OS=Mus musculus OX=10090 GN=Cdk12 PE=1 SV=2
Q3MJK5	Cyclin-dependent kinase 12 OS=Rattus norvegicus OX=10116 GN=Cdk12 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050108 all species →	Family	Cyclin-dependent kinase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24056 all species →	CELL DIVISION PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000307 all species →	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0008024 all species →	Cellular Component	cyclin/CDK positive transcription elongation factor complex	Interproscan
GO:0008353 all species →	Molecular Function	RNA polymerase II CTD heptapeptide repeat kinase activity	Interproscan
GO:0030332 all species →	Molecular Function	cyclin binding	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g16728.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g16728.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

45.9Max TPM

36.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	36.26	45.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	45.88
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	45.53
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	45.21
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	44.80
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	43.94
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	43.37
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	42.63
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	41.43
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	41.27
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	40.76
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	40.52
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	40.10
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	39.52
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	39.34
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	38.77
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	38.29
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	38.20
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	37.90
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	37.71
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	37.39
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	36.57
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	36.50
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	36.36
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	35.86
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	34.61
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	34.35
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	33.79
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	33.62
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	32.22
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	31.35
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	30.62
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	30.56
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	30.36
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	29.01
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	28.15
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	27.57
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	26.90
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	23.07
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	19.95

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.