Gene detail

Detailed information of g16733.t1 in Acropora digitifera

Genomic Location: chr8Alt:520660...525864
NR annotation: XP_029196090.2, sorting nexin-11-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RMH8	Sorting nexin-3 OS=Bos taurus OX=9913 GN=SNX3 PE=2 SV=3
O60493	Sorting nexin-3 OS=Homo sapiens OX=9606 GN=SNX3 PE=1 SV=3
O70492	Sorting nexin-3 OS=Mus musculus OX=10090 GN=Snx3 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR043544 all species →	Family	Sorting nexin-10/11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46209 all species →	PX DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016050 all species →	Biological Process	vesicle organization	Interproscan
GO:1901981 all species →	Molecular Function	phosphatidylinositol phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g16733.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g16733.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

85.3Max TPM

47.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	47.22	85.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	85.33
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	75.61
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	68.37
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	67.62
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	65.62
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	60.19
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	57.12
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	57.05
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	54.98
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	54.85
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	54.02
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	52.56
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	51.54
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	50.89
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	50.52
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	49.84
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	49.80
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	47.91
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	47.46
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	47.41
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	47.31
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	46.29
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	46.25
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	43.46
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	43.22
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	42.80
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	42.11
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	41.37
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	36.85
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	36.83
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	36.24
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	35.90
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	32.86
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	31.79
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	30.80
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	29.56
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	24.14
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	23.33
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	21.83

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.