Gene detail

Detailed information of g16743.t1 in Acropora digitifera

Genomic Location: chr8Alt:597175...600109
NR annotation: XP_015752214.1, PREDICTED: fas apoptotic inhibitory molecule 1-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WUD8	Fas apoptotic inhibitory molecule 1 OS=Mus musculus OX=10090 GN=Faim PE=1 SV=1
Q8R5H8	Fas apoptotic inhibitory molecule 1 OS=Rattus norvegicus OX=10116 GN=Faim PE=2 SV=1
Q0IIF6	Fas apoptotic inhibitory molecule 1 OS=Bos taurus OX=9913 GN=FAIM PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06905 all species →	FAIM1	Fas apoptotic inhibitory molecule (FAIM1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038513 all species →	Homologous_superfamily	FAIM1 domain superfamily	Interproscan
IPR010695 all species →	Family	Fas apoptotic inhibitory molecule 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13088 all species →	FAS APOPTOTIC INHIBITORY MOLECULE FAIM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043066 all species →	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0007249 all species →	Biological Process	canonical NF-kappaB signal transduction	Interproscan
GO:0050769 all species →	Biological Process	positive regulation of neurogenesis	Interproscan
GO:1902042 all species →	Biological Process	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g16743.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g16743.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

154.2Max TPM

119.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	119.82	154.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	154.20
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	147.97
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	140.32
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	139.14
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	138.18
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	138.13
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	136.11
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	134.26
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	133.07
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	130.73
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	128.45
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	127.80
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	127.54
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	126.96
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	125.36
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	123.34
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	122.22
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	121.78
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	120.52
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	120.34
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	118.79
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	117.57
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	116.73
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	115.92
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	114.26
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	110.08
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	108.87
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	108.15
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	107.07
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	106.25
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	106.08
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	104.23
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	104.04
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	103.54
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	101.63
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	101.26
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	99.36
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	99.13
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	93.77

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.