Gene detail

Detailed information of g16746.t1 in Acropora digitifera

Genomic Location: chr8Alt:613647...616434
NR annotation: XP_029196039.1, mitochondrial substrate carrier family protein ucpB-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0G143	Mitochondrial substrate carrier family protein ucpB OS=Dictyostelium discoideum OX=44689 GN=ucpB PE=3 SV=1
Q9CR58	Kidney mitochondrial carrier protein 1 OS=Mus musculus OX=10090 GN=Slc25a30 PE=1 SV=1
Q5PQM9	Kidney mitochondrial carrier protein 1 OS=Rattus norvegicus OX=10116 GN=Slc25a30 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR050391 all species →	Family	Mitochondrial Metabolite Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45618 all species →	MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g16746.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g16746.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

121.4Max TPM

43.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	43.06	121.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	121.41
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	82.39
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	67.13
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	64.04
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	62.45
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	60.96
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	59.59
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	58.53
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	51.86
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	51.16
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	49.49
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	48.85
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	47.84
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	44.89
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	44.52
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	44.42
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	40.75
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	40.56
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	40.39
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	39.44
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	39.29
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	38.64
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	35.63
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	35.59
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	34.20
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	34.20
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	34.16
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	33.25
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	31.63
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	29.72
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	28.92
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	27.52
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	26.25
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	23.88
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	23.26
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	22.39
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	21.09
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	19.69
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	19.23

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.